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PMC:7558333 / 27459-28815 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T68 113-118 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T43 113-118 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T151 54-62 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T152 77-81 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T153 128-130 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T154 457-466 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T155 829-838 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T156 882-891 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T157 935-944 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T158 988-997 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T159 1041-1050 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T160 1097-1106 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T161 1111-1120 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T162 1125-1134 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T163 1169-1178 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T164 1203-1212 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T165 1274-1283 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T166 1284-1286 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T167 1288-1310 Disease denotes Invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T168 1297-1310 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T210 51-53 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T211 357-361 http://purl.obolibrary.org/obo/CLO_0001407 denotes 5 2
T212 395-399 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 2
T213 404-408 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T214 619-623 http://purl.obolibrary.org/obo/CLO_0054055 denotes 7 1
T215 666-670 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T216 698-710 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T217 746-758 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T218 797-809 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T219 810-812 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T220 850-862 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T221 903-915 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T222 916-924 http://purl.obolibrary.org/obo/CLO_0001010 denotes 13 0 1
T223 956-968 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T224 1009-1021 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T225 1062-1074 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T226 1078-1080 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T227 1158-1160 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T228 1163-1165 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T229 1248-1261 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonizations
T230 1263-1265 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T26 233-235 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T236 0-82 Sentence denotes Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.
T237 83-158 Sentence denotes Patient Respiratory Samples Serum Samples IA Classification According to
T238 159-350 Sentence denotes Aspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index > 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU
T239 351-394 Sentence denotes 1 5 5 2 2 putative putative probable
T240 395-438 Sentence denotes 2 2 2 1 1 putative putative probable
T241 439-486 Sentence denotes 3 0 3 0 1 no infection putative probable
T242 487-530 Sentence denotes 4 4 6 0 0 putative putative putative
T243 531-574 Sentence denotes 5 4 4 0 0 putative putative putative
T244 575-618 Sentence denotes 6 2 5 0 0 putative putative putative
T245 619-662 Sentence denotes 7 1 5 0 0 putative putative putative
T246 663-710 Sentence denotes 8 1 1 0 0 putative putative colonization
T247 711-758 Sentence denotes 9 1 0 1 0 putative putative colonization
T248 759-809 Sentence denotes 10 1 * 0 0 0 putative putative colonization
T249 810-862 Sentence denotes 11 0 1 0 0 no infection putative colonization
T250 863-915 Sentence denotes 12 0 1 0 0 no infection putative colonization
T251 916-968 Sentence denotes 13 0 1 0 0 no infection putative colonization
T252 969-1021 Sentence denotes 14 0 1 0 0 no infection putative colonization
T253 1022-1074 Sentence denotes 15 0 1 0 0 no infection putative colonization
T254 1075-1134 Sentence denotes 16–45 0 0 0 0 no infection no infection no infection
T255 1135-1283 Sentence denotes Total 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection
T256 1284-1287 Sentence denotes IA.
T257 1288-1356 Sentence denotes Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
646 83-90 Species denotes Patient Tax:9606
647 159-170 Species denotes Aspergillus Tax:746128
648 457-466 Disease denotes infection MESH:D007239
649 829-838 Disease denotes infection MESH:D007239
650 882-891 Disease denotes infection MESH:D007239
651 935-944 Disease denotes infection MESH:D007239
652 988-997 Disease denotes infection MESH:D007239
653 1041-1050 Disease denotes infection MESH:D007239
654 1097-1106 Disease denotes infection MESH:D007239
655 1111-1120 Disease denotes infection MESH:D007239
656 1125-1134 Disease denotes infection MESH:D007239
657 1169-1178 Disease denotes infection MESH:D007239
658 1203-1212 Disease denotes infection MESH:D007239
659 1274-1283 Disease denotes infection MESH:D007239
663 63-71 Species denotes patients Tax:9606
664 54-62 Disease denotes COVID-19 MESH:C000657245
665 77-81 Disease denotes ARDS MESH:D012128
668 1316-1339 Species denotes Aspergillus tubingensis Tax:5068
669 1288-1310 Disease denotes Invasive aspergillosis MESH:D055744