PMC:7558333 / 27459-28815 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T68","span":{"begin":113,"end":118},"obj":"Body_part"}],"attributes":[{"id":"A68","pred":"fma_id","subj":"T68","obj":"http://purl.org/sig/ont/fma/fma63083"}],"text":"Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.\nPatient Respiratory Samples Serum Samples IA Classification According to\nAspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index \u003e 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU\n1 5 5 2 2 putative putative probable\n2 2 2 1 1 putative putative probable\n3 0 3 0 1 no infection putative probable\n4 4 6 0 0 putative putative putative\n5 4 4 0 0 putative putative putative\n6 2 5 0 0 putative putative putative\n7 1 5 0 0 putative putative putative\n8 1 1 0 0 putative putative colonization\n9 1 0 1 0 putative putative colonization\n10 1 * 0 0 0 putative putative colonization\n11 0 1 0 0 no infection putative colonization\n12 0 1 0 0 no infection putative colonization\n13 0 1 0 0 no infection putative colonization\n14 0 1 0 0 no infection putative colonization\n15 0 1 0 0 no infection putative colonization\n16–45 0 0 0 0 no infection no infection no infection\nTotal 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection\nIA. Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section)."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T43","span":{"begin":113,"end":118},"obj":"Body_part"}],"attributes":[{"id":"A43","pred":"uberon_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"}],"text":"Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.\nPatient Respiratory Samples Serum Samples IA Classification According to\nAspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index \u003e 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU\n1 5 5 2 2 putative putative probable\n2 2 2 1 1 putative putative probable\n3 0 3 0 1 no infection putative probable\n4 4 6 0 0 putative putative putative\n5 4 4 0 0 putative putative putative\n6 2 5 0 0 putative putative putative\n7 1 5 0 0 putative putative putative\n8 1 1 0 0 putative putative colonization\n9 1 0 1 0 putative putative colonization\n10 1 * 0 0 0 putative putative colonization\n11 0 1 0 0 no infection putative colonization\n12 0 1 0 0 no infection putative colonization\n13 0 1 0 0 no infection putative colonization\n14 0 1 0 0 no infection putative colonization\n15 0 1 0 0 no infection putative colonization\n16–45 0 0 0 0 no infection no infection no infection\nTotal 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection\nIA. Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T151","span":{"begin":54,"end":62},"obj":"Disease"},{"id":"T152","span":{"begin":77,"end":81},"obj":"Disease"},{"id":"T153","span":{"begin":128,"end":130},"obj":"Disease"},{"id":"T154","span":{"begin":457,"end":466},"obj":"Disease"},{"id":"T155","span":{"begin":829,"end":838},"obj":"Disease"},{"id":"T156","span":{"begin":882,"end":891},"obj":"Disease"},{"id":"T157","span":{"begin":935,"end":944},"obj":"Disease"},{"id":"T158","span":{"begin":988,"end":997},"obj":"Disease"},{"id":"T159","span":{"begin":1041,"end":1050},"obj":"Disease"},{"id":"T160","span":{"begin":1097,"end":1106},"obj":"Disease"},{"id":"T161","span":{"begin":1111,"end":1120},"obj":"Disease"},{"id":"T162","span":{"begin":1125,"end":1134},"obj":"Disease"},{"id":"T163","span":{"begin":1169,"end":1178},"obj":"Disease"},{"id":"T164","span":{"begin":1203,"end":1212},"obj":"Disease"},{"id":"T165","span":{"begin":1274,"end":1283},"obj":"Disease"},{"id":"T166","span":{"begin":1284,"end":1286},"obj":"Disease"},{"id":"T167","span":{"begin":1288,"end":1310},"obj":"Disease"},{"id":"T168","span":{"begin":1297,"end":1310},"obj":"Disease"}],"attributes":[{"id":"A151","pred":"mondo_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A152","pred":"mondo_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A153","pred":"mondo_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"},{"id":"A154","pred":"mondo_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A155","pred":"mondo_id","subj":"T155","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A156","pred":"mondo_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A157","pred":"mondo_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A158","pred":"mondo_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A159","pred":"mondo_id","subj":"T159","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A160","pred":"mondo_id","subj":"T160","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A161","pred":"mondo_id","subj":"T161","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A162","pred":"mondo_id","subj":"T162","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A163","pred":"mondo_id","subj":"T163","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A164","pred":"mondo_id","subj":"T164","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A165","pred":"mondo_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A166","pred":"mondo_id","subj":"T166","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"},{"id":"A167","pred":"mondo_id","subj":"T167","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"},{"id":"A168","pred":"mondo_id","subj":"T168","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"}],"text":"Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.\nPatient Respiratory Samples Serum Samples IA Classification According to\nAspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index \u003e 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU\n1 5 5 2 2 putative putative probable\n2 2 2 1 1 putative putative probable\n3 0 3 0 1 no infection putative probable\n4 4 6 0 0 putative putative putative\n5 4 4 0 0 putative putative putative\n6 2 5 0 0 putative putative putative\n7 1 5 0 0 putative putative putative\n8 1 1 0 0 putative putative colonization\n9 1 0 1 0 putative putative colonization\n10 1 * 0 0 0 putative putative colonization\n11 0 1 0 0 no infection putative colonization\n12 0 1 0 0 no infection putative colonization\n13 0 1 0 0 no infection putative colonization\n14 0 1 0 0 no infection putative colonization\n15 0 1 0 0 no infection putative colonization\n16–45 0 0 0 0 no infection no infection no infection\nTotal 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection\nIA. Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T210","span":{"begin":51,"end":53},"obj":"http://purl.obolibrary.org/obo/CLO_0053799"},{"id":"T211","span":{"begin":357,"end":361},"obj":"http://purl.obolibrary.org/obo/CLO_0001407"},{"id":"T212","span":{"begin":395,"end":399},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T213","span":{"begin":404,"end":408},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T214","span":{"begin":619,"end":623},"obj":"http://purl.obolibrary.org/obo/CLO_0054055"},{"id":"T215","span":{"begin":666,"end":670},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T216","span":{"begin":698,"end":710},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T217","span":{"begin":746,"end":758},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T218","span":{"begin":797,"end":809},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T219","span":{"begin":810,"end":812},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T220","span":{"begin":850,"end":862},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T221","span":{"begin":903,"end":915},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T222","span":{"begin":916,"end":924},"obj":"http://purl.obolibrary.org/obo/CLO_0001010"},{"id":"T223","span":{"begin":956,"end":968},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T224","span":{"begin":1009,"end":1021},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T225","span":{"begin":1062,"end":1074},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T226","span":{"begin":1078,"end":1080},"obj":"http://purl.obolibrary.org/obo/CLO_0053799"},{"id":"T227","span":{"begin":1158,"end":1160},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T228","span":{"begin":1163,"end":1165},"obj":"http://purl.obolibrary.org/obo/CLO_0001313"},{"id":"T229","span":{"begin":1248,"end":1261},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T230","span":{"begin":1263,"end":1265},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"}],"text":"Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.\nPatient Respiratory Samples Serum Samples IA Classification According to\nAspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index \u003e 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU\n1 5 5 2 2 putative putative probable\n2 2 2 1 1 putative putative probable\n3 0 3 0 1 no infection putative probable\n4 4 6 0 0 putative putative putative\n5 4 4 0 0 putative putative putative\n6 2 5 0 0 putative putative putative\n7 1 5 0 0 putative putative putative\n8 1 1 0 0 putative putative colonization\n9 1 0 1 0 putative putative colonization\n10 1 * 0 0 0 putative putative colonization\n11 0 1 0 0 no infection putative colonization\n12 0 1 0 0 no infection putative colonization\n13 0 1 0 0 no infection putative colonization\n14 0 1 0 0 no infection putative colonization\n15 0 1 0 0 no infection putative colonization\n16–45 0 0 0 0 no infection no infection no infection\nTotal 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection\nIA. Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section)."}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T26","span":{"begin":233,"end":235},"obj":"GlycoEpitope"}],"attributes":[{"id":"A26","pred":"glyco_epitope_db_id","subj":"T26","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.\nPatient Respiratory Samples Serum Samples IA Classification According to\nAspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index \u003e 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU\n1 5 5 2 2 putative putative probable\n2 2 2 1 1 putative putative probable\n3 0 3 0 1 no infection putative probable\n4 4 6 0 0 putative putative putative\n5 4 4 0 0 putative putative putative\n6 2 5 0 0 putative putative putative\n7 1 5 0 0 putative putative putative\n8 1 1 0 0 putative putative colonization\n9 1 0 1 0 putative putative colonization\n10 1 * 0 0 0 putative putative colonization\n11 0 1 0 0 no infection putative colonization\n12 0 1 0 0 no infection putative colonization\n13 0 1 0 0 no infection putative colonization\n14 0 1 0 0 no infection putative colonization\n15 0 1 0 0 no infection putative colonization\n16–45 0 0 0 0 no infection no infection no infection\nTotal 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection\nIA. Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T236","span":{"begin":0,"end":82},"obj":"Sentence"},{"id":"T237","span":{"begin":83,"end":158},"obj":"Sentence"},{"id":"T238","span":{"begin":159,"end":350},"obj":"Sentence"},{"id":"T239","span":{"begin":351,"end":394},"obj":"Sentence"},{"id":"T240","span":{"begin":395,"end":438},"obj":"Sentence"},{"id":"T241","span":{"begin":439,"end":486},"obj":"Sentence"},{"id":"T242","span":{"begin":487,"end":530},"obj":"Sentence"},{"id":"T243","span":{"begin":531,"end":574},"obj":"Sentence"},{"id":"T244","span":{"begin":575,"end":618},"obj":"Sentence"},{"id":"T245","span":{"begin":619,"end":662},"obj":"Sentence"},{"id":"T246","span":{"begin":663,"end":710},"obj":"Sentence"},{"id":"T247","span":{"begin":711,"end":758},"obj":"Sentence"},{"id":"T248","span":{"begin":759,"end":809},"obj":"Sentence"},{"id":"T249","span":{"begin":810,"end":862},"obj":"Sentence"},{"id":"T250","span":{"begin":863,"end":915},"obj":"Sentence"},{"id":"T251","span":{"begin":916,"end":968},"obj":"Sentence"},{"id":"T252","span":{"begin":969,"end":1021},"obj":"Sentence"},{"id":"T253","span":{"begin":1022,"end":1074},"obj":"Sentence"},{"id":"T254","span":{"begin":1075,"end":1134},"obj":"Sentence"},{"id":"T255","span":{"begin":1135,"end":1283},"obj":"Sentence"},{"id":"T256","span":{"begin":1284,"end":1287},"obj":"Sentence"},{"id":"T257","span":{"begin":1288,"end":1356},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.\nPatient Respiratory Samples Serum Samples IA Classification According to\nAspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index \u003e 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU\n1 5 5 2 2 putative putative probable\n2 2 2 1 1 putative putative probable\n3 0 3 0 1 no infection putative probable\n4 4 6 0 0 putative putative putative\n5 4 4 0 0 putative putative putative\n6 2 5 0 0 putative putative putative\n7 1 5 0 0 putative putative putative\n8 1 1 0 0 putative putative colonization\n9 1 0 1 0 putative putative colonization\n10 1 * 0 0 0 putative putative colonization\n11 0 1 0 0 no infection putative colonization\n12 0 1 0 0 no infection putative colonization\n13 0 1 0 0 no infection putative colonization\n14 0 1 0 0 no infection putative colonization\n15 0 1 0 0 no infection putative colonization\n16–45 0 0 0 0 no infection no infection no infection\nTotal 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection\nIA. Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"646","span":{"begin":83,"end":90},"obj":"Species"},{"id":"647","span":{"begin":159,"end":170},"obj":"Species"},{"id":"648","span":{"begin":457,"end":466},"obj":"Disease"},{"id":"649","span":{"begin":829,"end":838},"obj":"Disease"},{"id":"650","span":{"begin":882,"end":891},"obj":"Disease"},{"id":"651","span":{"begin":935,"end":944},"obj":"Disease"},{"id":"652","span":{"begin":988,"end":997},"obj":"Disease"},{"id":"653","span":{"begin":1041,"end":1050},"obj":"Disease"},{"id":"654","span":{"begin":1097,"end":1106},"obj":"Disease"},{"id":"655","span":{"begin":1111,"end":1120},"obj":"Disease"},{"id":"656","span":{"begin":1125,"end":1134},"obj":"Disease"},{"id":"657","span":{"begin":1169,"end":1178},"obj":"Disease"},{"id":"658","span":{"begin":1203,"end":1212},"obj":"Disease"},{"id":"659","span":{"begin":1274,"end":1283},"obj":"Disease"},{"id":"663","span":{"begin":63,"end":71},"obj":"Species"},{"id":"664","span":{"begin":54,"end":62},"obj":"Disease"},{"id":"665","span":{"begin":77,"end":81},"obj":"Disease"},{"id":"668","span":{"begin":1316,"end":1339},"obj":"Species"},{"id":"669","span":{"begin":1288,"end":1310},"obj":"Disease"}],"attributes":[{"id":"A646","pred":"tao:has_database_id","subj":"646","obj":"Tax:9606"},{"id":"A647","pred":"tao:has_database_id","subj":"647","obj":"Tax:746128"},{"id":"A648","pred":"tao:has_database_id","subj":"648","obj":"MESH:D007239"},{"id":"A649","pred":"tao:has_database_id","subj":"649","obj":"MESH:D007239"},{"id":"A650","pred":"tao:has_database_id","subj":"650","obj":"MESH:D007239"},{"id":"A651","pred":"tao:has_database_id","subj":"651","obj":"MESH:D007239"},{"id":"A652","pred":"tao:has_database_id","subj":"652","obj":"MESH:D007239"},{"id":"A653","pred":"tao:has_database_id","subj":"653","obj":"MESH:D007239"},{"id":"A654","pred":"tao:has_database_id","subj":"654","obj":"MESH:D007239"},{"id":"A655","pred":"tao:has_database_id","subj":"655","obj":"MESH:D007239"},{"id":"A656","pred":"tao:has_database_id","subj":"656","obj":"MESH:D007239"},{"id":"A657","pred":"tao:has_database_id","subj":"657","obj":"MESH:D007239"},{"id":"A658","pred":"tao:has_database_id","subj":"658","obj":"MESH:D007239"},{"id":"A659","pred":"tao:has_database_id","subj":"659","obj":"MESH:D007239"},{"id":"A663","pred":"tao:has_database_id","subj":"663","obj":"Tax:9606"},{"id":"A664","pred":"tao:has_database_id","subj":"664","obj":"MESH:C000657245"},{"id":"A665","pred":"tao:has_database_id","subj":"665","obj":"MESH:D012128"},{"id":"A668","pred":"tao:has_database_id","subj":"668","obj":"Tax:5068"},{"id":"A669","pred":"tao:has_database_id","subj":"669","obj":"MESH:D055744"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 6 Mycological results and classification of 45 COVID-19 patients with ARDS.\nPatient Respiratory Samples Serum Samples IA Classification According to\nAspergillus Positive Culture (nb Samples) Positive 28S PCR (nb Samples) GM Index \u003e 0.5 (nb Samples) Positive 28S PCR (nb Samples) AspICU (Blot et al., 2012) AspICU + PCR Modified AspICU\n1 5 5 2 2 putative putative probable\n2 2 2 1 1 putative putative probable\n3 0 3 0 1 no infection putative probable\n4 4 6 0 0 putative putative putative\n5 4 4 0 0 putative putative putative\n6 2 5 0 0 putative putative putative\n7 1 5 0 0 putative putative putative\n8 1 1 0 0 putative putative colonization\n9 1 0 1 0 putative putative colonization\n10 1 * 0 0 0 putative putative colonization\n11 0 1 0 0 no infection putative colonization\n12 0 1 0 0 no infection putative colonization\n13 0 1 0 0 no infection putative colonization\n14 0 1 0 0 no infection putative colonization\n15 0 1 0 0 no infection putative colonization\n16–45 0 0 0 0 no infection no infection no infection\nTotal 9 putative (22%) 36 no infection 15 putative (33%)30 no infection 3 probable (7%) 4 putative (9%) 8 colonizations (18%) 30 no infection\nIA. Invasive aspergillosis, 1 * Aspergillus tubingensis (Nigri section)."}