PMC:7546716 / 6467-7107
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T97 | 19-24 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T98 | 51-55 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T99 | 158-160 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T100 | 240-242 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T101 | 264-269 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T102 | 346-348 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T103 | 409-414 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T104 | 553-558 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T105 | 590-594 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T9 | 51-55 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T57 | 148-156 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T58 | 434-442 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T59 | 631-639 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T81 | 17-24 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T82 | 51-55 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T83 | 51-55 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T84 | 85-94 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activated |
| T85 | 130-137 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T86 | 249-258 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activated |
| T87 | 262-269 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T88 | 330-332 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T89 | 407-414 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T90 | 551-558 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T91 | 588-594 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T71 | 158-160 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T73 | 240-242 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T75 | 346-348 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T77 | 473-481 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15 | 482-488 | http://purl.obolibrary.org/obo/GO_0007613 | denotes | memory |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T22 | 0-640 | Sentence | denotes | Both ILC2 and γδ T cells are centrally involved in lung homoeostasis and are rapidly activated in response to pathogens including viruses;19, 21 in COVID-19, IL-4 is upregulated at early stages and in milder forms of the disease,10 whereas IL-9 and activated γδ T cells are observed more frequently in mild-to-moderate disease,9, 22 and IFNγ and IL-17 progressively increase with disease severity.6 Vγ9Vδ2+ T cells from patients with COVID-19 have been found to express an effector memory phenotype three times more frequently than do conventional αβ T cells,23 thus suggesting that this T cell subset is selectively stimulated in COVID-19. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 360 | 158-162 | Gene | denotes | IL-4 | Gene:3565 |
| 361 | 240-244 | Gene | denotes | IL-9 | Gene:3578 |
| 362 | 337-341 | Gene | denotes | IFNγ | Gene:3458 |
| 363 | 346-351 | Gene | denotes | IL-17 | Gene:3605 |
| 368 | 420-428 | Species | denotes | patients | Tax:9606 |
| 370 | 51-68 | Disease | denotes | lung homoeostasis | MESH:D008171 |
| 371 | 148-156 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 372 | 434-442 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 373 | 548-552 | Disease | denotes | αβ T | MESH:D001260 |
| 374 | 631-639 | Disease | denotes | COVID-19 | MESH:C000657245 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 33073244-27543964-66244526 | 138-140 | 27543964 | denotes | 19 |
| 33073244-28555812-66244527 | 142-144 | 28555812 | denotes | 21 |
| 33073244-32460357-66244528 | 229-231 | 32460357 | denotes | 10 |
| 33073244-31986264-66244529 | 327-328 | 31986264 | denotes | 9 |
| 33073244-32467616-66244530 | 559-561 | 32467616 | denotes | 23 |