PMC:7464116 / 2519-4523
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T8 | 1401-1409 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T9 | 1448-1454 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T10 | 1525-1531 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T11 | 1654-1660 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T12 | 1941-1947 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T7 | 1448-1454 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T8 | 1525-1531 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T9 | 1654-1660 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T10 | 1941-1947 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T44 | 696-704 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T45 | 943-946 | Disease | denotes | flu | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T46 | 1019-1027 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T47 | 1112-1121 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T48 | 1148-1167 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
| T49 | 1224-1246 | Disease | denotes | venous thromboembolism | http://purl.obolibrary.org/obo/MONDO_0005399 |
| T50 | 1248-1251 | Disease | denotes | VTE | http://purl.obolibrary.org/obo/MONDO_0005399 |
| T51 | 1263-1269 | Disease | denotes | stroke | http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057 |
| T53 | 1274-1297 | Disease | denotes | acute coronary syndrome | http://purl.obolibrary.org/obo/MONDO_0005542 |
| T54 | 1304-1325 | Disease | denotes | myocardial infarction | http://purl.obolibrary.org/obo/MONDO_0005068 |
| T55 | 1380-1388 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T56 | 1421-1446 | Disease | denotes | acute respiratory failure | http://purl.obolibrary.org/obo/MONDO_0001208|http://purl.obolibrary.org/obo/MONDO_0021113 |
| T58 | 1519-1538 | Disease | denotes | acute kidney injury | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T59 | 1532-1538 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T60 | 1540-1543 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T61 | 1569-1577 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T62 | 1569-1573 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T63 | 1646-1668 | Disease | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/MONDO_0005300 |
| T64 | 1654-1668 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
| T66 | 1670-1673 | Disease | denotes | CKD | http://purl.obolibrary.org/obo/MONDO_0005300 |
| T67 | 1719-1727 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T68 | 1816-1824 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T69 | 1825-1834 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T70 | 1941-1956 | Disease | denotes | kidney diseases | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
| T72 | 1977-1985 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T30 | 342-345 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T31 | 414-417 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T32 | 427-428 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T33 | 532-537 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T34 | 546-549 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T35 | 632-635 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T36 | 694-695 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37 | 721-724 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T38 | 791-792 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T39 | 941-942 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T40 | 978-981 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T41 | 1127-1128 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T42 | 1327-1329 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T43 | 1448-1454 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T44 | 1448-1454 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T45 | 1448-1454 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T46 | 1466-1469 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T47 | 1525-1531 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T48 | 1525-1531 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T49 | 1525-1531 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T50 | 1654-1660 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T51 | 1654-1660 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T52 | 1654-1660 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T53 | 1676-1678 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T54 | 1702-1710 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney’s |
| T55 | 1702-1710 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney’s |
| T56 | 1702-1710 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney’s |
| T57 | 1762-1765 | http://purl.obolibrary.org/obo/PR_000001343 | denotes | aim |
| T58 | 1941-1947 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T59 | 1941-1947 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T60 | 1941-1947 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T19 | 0-70 | Sentence | denotes | The Americas and Europe are the most affected continents in the world. |
| T20 | 71-172 | Sentence | denotes | In the United States of America (U.S.A.), 4,103,674 cases and over 146,000 deaths have been reported. |
| T21 | 173-301 | Sentence | denotes | In Europe, many outbreaks are steadily rising in Russia, Spain, UK and Italy, with over 200,000 overall deaths in the continent. |
| T22 | 302-400 | Sentence | denotes | However, in China the rate of new cases has progressively decreased substantially since March [3]. |
| T23 | 401-452 | Sentence | denotes | The pandemic has also had a severe economic impact. |
| T24 | 453-717 | Sentence | denotes | In fact, to help improve the clinical management of patients infected with the virus, Europe has mobilized more than 10 million euros from research funding and the United Kingdom has also invested £20,000,000 to allow for the development of a COVID-19 vaccine [5]. |
| T25 | 718-1331 | Sentence | denotes | It has also been estimated that in the U.S.A., the health care costs for a single infected patient is over $3000, resulting in an overall predicted expenditure of $654.0 billion over the entire period of the pandemic [6,7].A flu-like syndrome of mild severity has been observed in most cases (80%) of COVID-19 [8,9], but in 20% of cases there have been other complications such as interstitial pneumonia with a variable degree of respiratory failure [10] as well as thromboembolic complications, including venous thromboembolism (VTE), ischemic stroke and acute coronary syndrome (ACS)/myocardial infarction [11]. |
| T26 | 1332-1580 | Sentence | denotes | Although the principal features associated with COVID-19 are diffuse alveolar damage and acute respiratory failure, kidney impairment has also often developed, with the frequent onset of acute kidney injury (AKI) in patients infected by SARS-CoV-2. |
| T27 | 1581-1680 | Sentence | denotes | In addition, more than 20% of deceased patients were affected by chronic kidney disease (CKD) [11]. |
| T28 | 1681-1757 | Sentence | denotes | For this reason, the kidney’s role in COVID-19 needs to be investigated [8]. |
| T29 | 1758-2004 | Sentence | denotes | The aim of this review is to describe the main aspects of COVID-19 infection, namely the epidemiology and pathophysiology, together with prevention strategies and the contribution of kidney diseases to the prognosis of COVID-19 affected patients. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T13 | 1112-1121 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T14 | 1148-1167 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
| T15 | 1184-1198 | Phenotype | denotes | thromboembolic | http://purl.obolibrary.org/obo/HP_0001907 |
| T16 | 1231-1246 | Phenotype | denotes | thromboembolism | http://purl.obolibrary.org/obo/HP_0001907 |
| T17 | 1254-1269 | Phenotype | denotes | ischemic stroke | http://purl.obolibrary.org/obo/HP_0002140 |
| T18 | 1304-1325 | Phenotype | denotes | myocardial infarction | http://purl.obolibrary.org/obo/HP_0001658 |
| T19 | 1393-1416 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
| T20 | 1427-1446 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
| T21 | 1519-1538 | Phenotype | denotes | acute kidney injury | http://purl.obolibrary.org/obo/HP_0001919 |
| T22 | 1540-1543 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T23 | 1646-1668 | Phenotype | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/HP_0012622 |
| T24 | 1670-1673 | Phenotype | denotes | CKD | http://purl.obolibrary.org/obo/HP_0012622 |
| T25 | 1941-1956 | Phenotype | denotes | kidney diseases | http://purl.obolibrary.org/obo/HP_0000112 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 110 | 505-513 | Species | denotes | patients | Tax:9606 |
| 111 | 581-586 | Species | denotes | euros | Tax:9319 |
| 112 | 809-816 | Species | denotes | patient | Tax:9606 |
| 113 | 1548-1556 | Species | denotes | patients | Tax:9606 |
| 114 | 1569-1579 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 115 | 1620-1628 | Species | denotes | patients | Tax:9606 |
| 116 | 1995-2003 | Species | denotes | patients | Tax:9606 |
| 117 | 146-152 | Disease | denotes | deaths | MESH:D003643 |
| 118 | 277-283 | Disease | denotes | deaths | MESH:D003643 |
| 119 | 514-522 | Disease | denotes | infected | MESH:D007239 |
| 120 | 696-704 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 121 | 800-808 | Disease | denotes | infected | MESH:D007239 |
| 122 | 943-960 | Disease | denotes | flu-like syndrome | MESH:D007251 |
| 123 | 1019-1027 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 124 | 1099-1121 | Disease | denotes | interstitial pneumonia | MESH:D009395 |
| 125 | 1148-1167 | Disease | denotes | respiratory failure | MESH:D012131 |
| 126 | 1184-1212 | Disease | denotes | thromboembolic complications | MESH:D013923 |
| 127 | 1224-1246 | Disease | denotes | venous thromboembolism | MESH:D054556 |
| 128 | 1248-1251 | Disease | denotes | VTE | MESH:D054556 |
| 129 | 1254-1297 | Disease | denotes | ischemic stroke and acute coronary syndrome | MESH:D020521 |
| 130 | 1304-1325 | Disease | denotes | myocardial infarction | MESH:D009203 |
| 131 | 1380-1388 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 132 | 1401-1416 | Disease | denotes | alveolar damage | MESH:D055370 |
| 133 | 1427-1446 | Disease | denotes | respiratory failure | MESH:D012131 |
| 134 | 1448-1465 | Disease | denotes | kidney impairment | MESH:D007674 |
| 135 | 1519-1538 | Disease | denotes | acute kidney injury | MESH:D058186 |
| 136 | 1557-1565 | Disease | denotes | infected | MESH:D007239 |
| 137 | 1646-1668 | Disease | denotes | chronic kidney disease | MESH:D051436 |
| 138 | 1670-1673 | Disease | denotes | CKD | MESH:D012080 |
| 139 | 1719-1727 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 140 | 1816-1824 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 141 | 1825-1834 | Disease | denotes | infection | MESH:D007239 |
| 142 | 1941-1956 | Disease | denotes | kidney diseases | MESH:D007674 |
| 143 | 1977-1985 | Disease | denotes | COVID-19 | MESH:C000657245 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32759645-32169574-58096133 | 714-715 | 32169574 | denotes | 5 |
| 32759645-32335410-58096134 | 938-939 | 32335410 | denotes | 7 |
| 32759645-32007143-58096135 | 1031-1032 | 32007143 | denotes | 9 |
| 32759645-32236465-58096136 | 1169-1171 | 32236465 | denotes | 10 |
| 32759645-32312654-58096137 | 1327-1329 | 32312654 | denotes | 11 |
| 32759645-32312654-58096138 | 1676-1678 | 32312654 | denotes | 11 |