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PMC:7463108 / 23139-23597 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T171 289-296 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T172 317-321 Body_part denotes mRNA http://purl.org/sig/ont/fma/fma67122
T173 379-384 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T174 417-429 Body_part denotes White matter http://purl.org/sig/ont/fma/fma83929

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T42 417-429 Body_part denotes White matter http://purl.obolibrary.org/obo/UBERON_0002316

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T62 274-277 Disease denotes SIV http://purl.obolibrary.org/obo/MONDO_0010029
T63 365-378 Disease denotes neuroblastoma http://purl.obolibrary.org/obo/MONDO_0005072

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T206 93-98 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T207 100-104 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T208 100-104 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T209 109-115 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T210 333-348 http://purl.obolibrary.org/obo/NCBITaxon_9544 denotes Rhesus macaques
T211 350-355 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T212 357-364 http://purl.obolibrary.org/obo/CLO_0009015 denotes SH-SY5Y
T213 357-364 http://purl.obolibrary.org/obo/CLO_0051795 denotes SH-SY5Y
T214 357-364 http://purl.obolibrary.org/obo/CLO_0052135 denotes SH-SY5Y
T215 357-364 http://purl.obolibrary.org/obo/CLO_0052139 denotes SH-SY5Y
T216 357-364 http://purl.obolibrary.org/obo/CLO_0052141 denotes SH-SY5Y
T217 379-393 http://purl.obolibrary.org/obo/CL_0001034 denotes cells in vitro

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T150 39-47 Chemical denotes Morphine http://purl.obolibrary.org/obo/CHEBI_17303
T151 100-104 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T152 117-120 Chemical denotes PFC http://purl.obolibrary.org/obo/CHEBI_134091
T153 187-195 Chemical denotes Morphine http://purl.obolibrary.org/obo/CHEBI_17303
T154 254-262 Chemical denotes Morphine http://purl.obolibrary.org/obo/CHEBI_17303
T155 289-296 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T156 357-359 Chemical denotes SH http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
561 28-32 Gene denotes Tat1 Gene:72472
562 297-302 Gene denotes HSPA5 Gene:14828
563 311-316 Gene denotes HSPA5 Gene:14828
649 93-98 Species denotes Mouse Tax:10090
650 333-348 Species denotes Rhesus macaques Tax:9544
651 350-355 Species denotes Human Tax:9606
714 274-277 Gene denotes SIV Gene:8114
737 305-308 Gene denotes Tat Gene:6898
776 365-378 Disease denotes neuroblastoma MESH:D009447
777 395-403 Disease denotes Pendyala
785 357-364 CellLine denotes SH-SY5Y CVCL:0019

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1026 6-27 http://purl.obolibrary.org/obo/GO_0007268 denotes Synaptic transmission

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T346 0-5 Sentence denotes 2012)
T347 6-158 Sentence denotes Synaptic transmission Tat1–86 No Morphine ex vivo (1 μM) to the bath ↓ mIPSC frequency Mouse, male and female, PFC slices, ex vivo (Xu and Fitting 2016)
T348 159-172 Sentence denotes SIVmacR71/17E
T349 173-251 Sentence denotes Tat No info • Morphine (escalating doses of 1–3 mg/kg i.m., q.i.d., 12 months)
T350 252-302 Sentence denotes • Morphine in vitro • SIV ↑ Synaptic protein HSPA5
T351 303-349 Sentence denotes • Tat ↑ HSPA5 mRNA (in vitro) Rhesus macaques;
T352 350-356 Sentence denotes Human,
T353 357-410 Sentence denotes SH-SY5Y neuroblastoma cells in vitro (Pendyala et al.
T354 411-416 Sentence denotes 2015)

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T31 365-378 Phenotype denotes neuroblastoma http://purl.obolibrary.org/obo/HP_0003006