PMC:7441777 / 35490-36221
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7441777","sourcedb":"PMC","sourceid":"7441777","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7441777","text":"As shown in Figure 5, it was observed that residues favoring the binding of the polyphenols with RdRp include Asp452, Arg553, Arg555, Val557, Asp618, Pro620, Lys621, Asp623, Arg624, Asp760, Asp761, and Glu811, Asp833, and Arg836. Most of these residues are located in the binding site of RdRp and can form direct contacts with polyphenols and remdesivir. Figure 5 shows that amino acids Pro620, Asp761 and Lys798 for RdRp/remdesivir; Asp452, Arg553, Pro620 and Lys621 for RdRp/EGCG; Ile548, Arg555, Thr556, Asp761 and Arg836 for RdRp/TF3; Glu811, His816, Asp833 and Tyr877 for RdRp/TF2b; Lys551, Arg553, Arg555 and Asp618 for RdRp/TF2a contributed more favorably towards the binding by contributing more than −1.0 kcal/mol in size.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T53","span":{"begin":375,"end":386},"obj":"Body_part"}],"attributes":[{"id":"A53","pred":"fma_id","subj":"T53","obj":"http://purl.org/sig/ont/fma/fma82739"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T467","span":{"begin":80,"end":91},"obj":"Chemical"},{"id":"T468","span":{"begin":327,"end":338},"obj":"Chemical"},{"id":"T469","span":{"begin":343,"end":353},"obj":"Chemical"},{"id":"T470","span":{"begin":375,"end":386},"obj":"Chemical"},{"id":"T471","span":{"begin":375,"end":380},"obj":"Chemical"},{"id":"T472","span":{"begin":381,"end":386},"obj":"Chemical"},{"id":"T473","span":{"begin":422,"end":432},"obj":"Chemical"},{"id":"T474","span":{"begin":477,"end":481},"obj":"Chemical"},{"id":"T475","span":{"begin":534,"end":537},"obj":"Chemical"}],"attributes":[{"id":"A467","pred":"chebi_id","subj":"T467","obj":"http://purl.obolibrary.org/obo/CHEBI_26195"},{"id":"A468","pred":"chebi_id","subj":"T468","obj":"http://purl.obolibrary.org/obo/CHEBI_26195"},{"id":"A469","pred":"chebi_id","subj":"T469","obj":"http://purl.obolibrary.org/obo/CHEBI_145994"},{"id":"A470","pred":"chebi_id","subj":"T470","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A471","pred":"chebi_id","subj":"T471","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A472","pred":"chebi_id","subj":"T472","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A473","pred":"chebi_id","subj":"T473","obj":"http://purl.obolibrary.org/obo/CHEBI_145994"},{"id":"A474","pred":"chebi_id","subj":"T474","obj":"http://purl.obolibrary.org/obo/CHEBI_4806"},{"id":"A475","pred":"chebi_id","subj":"T475","obj":"http://purl.obolibrary.org/obo/CHEBI_136608"},{"subj":"T467","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T468","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T469","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T470","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T471","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T472","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T473","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T474","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T475","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"863","span":{"begin":97,"end":101},"obj":"Gene"},{"id":"864","span":{"begin":288,"end":292},"obj":"Gene"},{"id":"865","span":{"begin":417,"end":421},"obj":"Gene"},{"id":"866","span":{"begin":472,"end":476},"obj":"Gene"},{"id":"867","span":{"begin":529,"end":533},"obj":"Gene"},{"id":"868","span":{"begin":577,"end":581},"obj":"Gene"},{"id":"869","span":{"begin":582,"end":586},"obj":"Gene"},{"id":"870","span":{"begin":626,"end":630},"obj":"Gene"},{"id":"871","span":{"begin":80,"end":91},"obj":"Chemical"},{"id":"872","span":{"begin":110,"end":116},"obj":"Chemical"},{"id":"873","span":{"begin":126,"end":132},"obj":"Chemical"},{"id":"874","span":{"begin":134,"end":140},"obj":"Chemical"},{"id":"875","span":{"begin":142,"end":148},"obj":"Chemical"},{"id":"876","span":{"begin":150,"end":156},"obj":"Chemical"},{"id":"877","span":{"begin":158,"end":164},"obj":"Chemical"},{"id":"878","span":{"begin":166,"end":172},"obj":"Chemical"},{"id":"879","span":{"begin":174,"end":180},"obj":"Chemical"},{"id":"880","span":{"begin":182,"end":188},"obj":"Chemical"},{"id":"881","span":{"begin":190,"end":196},"obj":"Chemical"},{"id":"882","span":{"begin":202,"end":208},"obj":"Chemical"},{"id":"883","span":{"begin":210,"end":216},"obj":"Chemical"},{"id":"884","span":{"begin":222,"end":228},"obj":"Chemical"},{"id":"885","span":{"begin":327,"end":338},"obj":"Chemical"},{"id":"886","span":{"begin":343,"end":353},"obj":"Chemical"},{"id":"887","span":{"begin":422,"end":432},"obj":"Chemical"}],"attributes":[{"id":"A863","pred":"tao:has_database_id","subj":"863","obj":"Gene:43740578"},{"id":"A864","pred":"tao:has_database_id","subj":"864","obj":"Gene:43740578"},{"id":"A865","pred":"tao:has_database_id","subj":"865","obj":"Gene:43740578"},{"id":"A866","pred":"tao:has_database_id","subj":"866","obj":"Gene:43740578"},{"id":"A867","pred":"tao:has_database_id","subj":"867","obj":"Gene:43740578"},{"id":"A868","pred":"tao:has_database_id","subj":"868","obj":"Gene:43740578"},{"id":"A869","pred":"tao:has_database_id","subj":"869","obj":"Gene:2959"},{"id":"A870","pred":"tao:has_database_id","subj":"870","obj":"Gene:43740578"},{"id":"A871","pred":"tao:has_database_id","subj":"871","obj":"MESH:D059808"},{"id":"A885","pred":"tao:has_database_id","subj":"885","obj":"MESH:D059808"},{"id":"A886","pred":"tao:has_database_id","subj":"886","obj":"MESH:C000606551"},{"id":"A887","pred":"tao:has_database_id","subj":"887","obj":"MESH:C000606551"},{"subj":"863","pred":"source","obj":"LitCovid-PubTator"},{"subj":"864","pred":"source","obj":"LitCovid-PubTator"},{"subj":"865","pred":"source","obj":"LitCovid-PubTator"},{"subj":"866","pred":"source","obj":"LitCovid-PubTator"},{"subj":"867","pred":"source","obj":"LitCovid-PubTator"},{"subj":"868","pred":"source","obj":"LitCovid-PubTator"},{"subj":"869","pred":"source","obj":"LitCovid-PubTator"},{"subj":"870","pred":"source","obj":"LitCovid-PubTator"},{"subj":"871","pred":"source","obj":"LitCovid-PubTator"},{"subj":"872","pred":"source","obj":"LitCovid-PubTator"},{"subj":"873","pred":"source","obj":"LitCovid-PubTator"},{"subj":"874","pred":"source","obj":"LitCovid-PubTator"},{"subj":"875","pred":"source","obj":"LitCovid-PubTator"},{"subj":"876","pred":"source","obj":"LitCovid-PubTator"},{"subj":"877","pred":"source","obj":"LitCovid-PubTator"},{"subj":"878","pred":"source","obj":"LitCovid-PubTator"},{"subj":"879","pred":"source","obj":"LitCovid-PubTator"},{"subj":"880","pred":"source","obj":"LitCovid-PubTator"},{"subj":"881","pred":"source","obj":"LitCovid-PubTator"},{"subj":"882","pred":"source","obj":"LitCovid-PubTator"},{"subj":"883","pred":"source","obj":"LitCovid-PubTator"},{"subj":"884","pred":"source","obj":"LitCovid-PubTator"},{"subj":"885","pred":"source","obj":"LitCovid-PubTator"},{"subj":"886","pred":"source","obj":"LitCovid-PubTator"},{"subj":"887","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T351","span":{"begin":230,"end":354},"obj":"Sentence"},{"id":"T352","span":{"begin":355,"end":731},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T351","pred":"source","obj":"LitCovid-sentences"},{"subj":"T352","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ca93ec","default":true},{"id":"LitCovid-PD-CHEBI","color":"#93ecb0"},{"id":"LitCovid-PubTator","color":"#ec9693"},{"id":"LitCovid-sentences","color":"#93aaec"}]}]}}