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PMC:7417788 / 35526-36837 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T803 48-53 GO:0007568 denotes aging
T804 363-369 CL:0000084 denotes T cell
T805 444-450 CL:0000236 denotes B cell
T806 534-548 CL:0000084 denotes clonal T cells
T807 746-753 CL:0000236 denotes B cells

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T300 365-369 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T301 446-450 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T302 543-548 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T303 748-753 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T664 56-57 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T665 113-115 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T666 125-126 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T667 182-184 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T668 249-251 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T669 320-322 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T670 363-369 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T671 401-403 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T672 444-450 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T673 482-484 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T674 541-548 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T675 568-570 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T676 610-611 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T677 639-643 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T678 746-753 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T679 773-775 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T680 815-816 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T681 844-848 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T682 915-920 http://purl.obolibrary.org/obo/CLO_0050421 denotes Chord
T683 996-998 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T684 1006-1011 http://purl.obolibrary.org/obo/CLO_0050421 denotes Chord
T685 1062-1063 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T686 1116-1121 http://purl.obolibrary.org/obo/CLO_0050421 denotes Chord
T687 1197-1199 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T688 1207-1212 http://purl.obolibrary.org/obo/CLO_0050421 denotes Chord
T689 1263-1264 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T274 106-108 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T275 113-115 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T277 175-177 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T278 182-184 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T280 234-236 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T281 249-251 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T283 305-307 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T284 320-322 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T286 386-388 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T287 401-403 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T289 467-469 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T290 482-484 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T292 561-563 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T293 568-570 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T295 766-768 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T296 773-775 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T298 996-998 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T300 999-1004 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T301 1197-1199 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T303 1200-1205 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T194 48-53 http://purl.obolibrary.org/obo/GO_0007568 denotes aging

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T184 0-578 Sentence denotes Figure 5 Abnormal TCR and BCR repertoire during aging. (A) Pie plots showing TCR clone differences across YA and AA groups. (B) Pie plots showing BCR clone differences across YA and AA groups. (C) Percentage of maximum clones between YA (n = 8) and AA groups (n = 8). (D) Diversity of TCR and BCR between YA (n = 8) and AA groups (n = 8). (E) Diversity of TCR in T cell subsets between YA (n = 8) and AA groups (n = 8). (F) Diversity of BCR in B cell subsets between YA (n = 8) and AA groups (n = 8). (G) Volcano plot showing DEGs of clonal T cells between the YA and AA groups.
T185 579-783 Sentence denotes P values were calculated using a paired, two-sided Wilcoxon test and FDR was corrected using the Benjamini-Hochberg procedure. (H) Volcano plot showing DEGs of clonal B cells between the YA and AA groups.
T186 784-1005 Sentence denotes P values were calculated using a paired, two-sided Wilcoxon test and FDR was corrected using the Benjamini-Hochberg procedure. (I) Chord diagram showing pairing of V and J segments within the TRB subset from the AA group.
T187 1006-1206 Sentence denotes Chord widths represent the proportion of sequences with a given V (colored) and J (gray) segment pairing. (J) Chord diagram showing pairing of V and J segments within the IGH subset from the AA group.
T188 1207-1311 Sentence denotes Chord widths represent the proportion of sequences with a given V (colored) and J (gray) segment pairing

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
746 18-21 Gene denotes TCR Gene:6962
747 26-29 Gene denotes BCR Gene:613
748 976-979 Gene denotes TRB Gene:6957
749 1177-1180 Gene denotes IGH Gene:3492
750 293-296 Gene denotes BCR Gene:613
751 437-440 Gene denotes BCR Gene:613
752 146-149 Gene denotes BCR Gene:613
753 356-359 Gene denotes TCR Gene:6962
754 285-288 Gene denotes TCR Gene:6962
755 77-80 Gene denotes TCR Gene:6962