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PMC:7402624 / 4846-5754 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T30 222-227 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T31 390-395 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 222-227 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 390-395 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
129 52-60 Species denotes patients Tax:9606
130 181-190 Species denotes SARS-CoV2 Tax:2697049
131 211-219 Species denotes patients Tax:9606
132 345-353 Species denotes patients Tax:9606
133 437-445 Species denotes patients Tax:9606
134 480-489 Species denotes SARS-CoV2 Tax:2697049
135 657-665 Species denotes patients Tax:9606
136 718-726 Species denotes patients Tax:9606
137 798-806 Species denotes patients Tax:9606
138 66-74 Disease denotes COVID-19 MESH:C000657245
139 191-200 Disease denotes infection MESH:D007239
140 202-210 Disease denotes COVID-19 MESH:C000657245
141 490-499 Disease denotes infection MESH:D007239
142 565-567 Disease denotes HD MESH:D006816
143 648-656 Disease denotes COVID-19 MESH:C000657245
144 789-797 Disease denotes COVID-19 MESH:C000657245
145 836-839 Disease denotes HDs

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 66-74 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 181-185 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 191-200 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 202-210 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 480-484 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 490-499 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 519-521 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T42 565-567 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T43 648-656 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 789-797 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T51 222-227 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T52 222-227 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T53 390-395 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T54 390-395 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T55 519-521 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T56 700-702 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T57 827-829 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T58 898-900 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T59 898-900 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 519-521 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T11 565-567 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T12 898-900 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T13 904-906 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T35 0-221 Sentence denotes We conducted an observational study of hospitalized patients with COVID-19 at the University of Pennsylvania (UPenn IRB 808542) that included 149 hospitalized adults with confirmed SARS-CoV2 infection (COVID-19 patients).
T36 222-306 Sentence denotes Blood was collected at enrollment (typically ~24-72 hours after admission; Fig. 1A).
T37 307-389 Sentence denotes Additional samples were obtained from patients who remained hospitalized on day 7.
T38 390-606 Sentence denotes Blood was also collected from non-hospitalized patients who had recovered from documented SARS-CoV2 infection (Recovered Donors (RD); n = 46), as well as from healthy donors (HD; n = 70) (UPenn IRB 834263) (Fig. 1A).
T39 607-704 Sentence denotes Clinical metadata are available from the COVID-19 patients over the course of disease (table S1).
T40 705-908 Sentence denotes Of the total patients and donors, flow cytometry data from PBMCs was collected from COVID-19 patients (n = 125), RDs (n = 36), and HDs (n = 60) along with clinical metadata (Fig. 1A and tables S2 to S4).