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PMC:7402624 / 13598-14884 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T77 6-10 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T78 96-100 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T79 108-117 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T80 266-270 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T81 305-309 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T82 366-371 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T83 406-409 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T84 413-424 Body_part denotes CD38+ cells http://purl.org/sig/ont/fma/fma0326121
T85 419-424 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T86 553-558 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T87 600-605 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T88 742-749 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 802-815 Body_part denotes cell clusters http://purl.org/sig/ont/fma/fma62807
T90 802-806 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T91 959-964 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 802-815 Body_part denotes cell clusters http://purl.obolibrary.org/obo/UBERON_0034922

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
413 0-3 Gene denotes CD8 Gene:925
414 62-70 Species denotes patients Tax:9606
415 53-61 Disease denotes COVID-19 MESH:C000657245
433 260-263 Gene denotes CD8 Gene:925
434 299-302 Gene denotes CD8 Gene:925
435 360-364 Gene denotes CD39 Gene:397298
436 413-417 Gene denotes CD38 Gene:952
437 953-956 Gene denotes CD8 Gene:925
440 351-354 Gene denotes PD1 Gene:100513601
441 547-550 Gene denotes CD8 Gene:925
445 496-498 Disease denotes HD MESH:D006816

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T106 53-61 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T107 496-498 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T108 626-628 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T109 648-650 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T110 657-665 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T111 1093-1095 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T112 1122-1124 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T113 1136-1144 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T114 1215-1217 Disease denotes BH http://purl.obolibrary.org/obo/MONDO_0010873

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T191 0-3 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T192 4-10 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T193 30-40 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T194 94-100 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T195 120-121 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T196 194-195 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T197 260-263 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T198 264-270 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T199 299-302 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T200 303-309 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T201 366-371 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T202 413-417 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T203 419-424 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T204 547-550 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T205 551-558 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T206 594-597 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T207 598-605 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T208 648-650 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T209 796-799 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T210 800-806 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T211 953-956 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T212 957-964 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T213 1122-1124 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T214 1205-1209 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T54 153-156 Chemical denotes PCA http://purl.obolibrary.org/obo/CHEBI_36751|http://purl.obolibrary.org/obo/CHEBI_62248
T56 351-354 Chemical denotes PD1 http://purl.obolibrary.org/obo/CHEBI_138655
T57 410-412 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T58 496-498 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T59 619-624 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T60 626-628 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T61 641-646 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T62 648-650 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T63 742-749 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T64 1086-1091 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T65 1093-1095 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T66 1115-1120 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T67 1122-1124 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T92 119-372 Sentence denotes (A) Principle Component Analysis (PCA) of aggregated flow cytometry data. (B) Representative flow cytometry plots of the gating strategy for CD8 T cell subsets. (C) Frequencies of CD8 T cell subsets as indicated. (D) Frequencies of PD1+ and CD39+ cells.
T93 373-1006 Sentence denotes Frequencies of (E) KI67+ and (F) HLA-DR+CD38+ cells and representative flow cytometry plots; green line at upper decile of HD. (G) (Top) Global viSNE projection of non-naïve CD8 T cells for all subjects pooled, non-naïve CD8 T cells from healthy donor (HD), recovered donor (RD), and COVID-19 patients concatenated and overlaid. (Bottom) viSNE projections of indicated protein expression. (H) viSNE projection of non-naïve CD8 T cell clusters identified by FlowSOM clustering. (I) Mean fluorescence intensity (MFI) as indicated, column-scaled z-score. (J) Percentage of non-naive CD8 T cells from each cohort in each FlowSOM cluster.
T94 1007-1159 Sentence denotes Boxes represent IQR. (C, D, E, F, J) Each dot represents an individual healthy donor (HD; green), recovered donor (RD; blue), or COVID-19 patient (red).
T95 1160-1286 Sentence denotes Significance determined by unpaired Wilcoxon test with BH correction: *p < 0.05, **p < 0.01, ***p < 0.001, and ****p < 0.0001.