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PMC:7402624 / 12931-13564 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T72 168-173 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T73 191-195 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T74 332-337 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T75 431-436 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T76 568-572 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
380 12-16 Gene denotes CD27 Gene:939
381 17-21 Gene denotes CCR7 Gene:1236
382 54-58 Gene denotes CD27 Gene:939
383 59-63 Gene denotes CCR7 Gene:1236
384 79-83 Gene denotes CD27 Gene:939
385 84-88 Gene denotes CCR7 Gene:1236
386 104-108 Gene denotes CD27 Gene:939
387 109-113 Gene denotes CCR7 Gene:1236
388 140-144 Gene denotes CD27 Gene:939
389 145-149 Gene denotes CCR7 Gene:1236
390 162-165 Gene denotes CD8 Gene:925
391 185-188 Gene denotes CD8 Gene:925
392 326-330 Gene denotes CD39 Gene:953
393 425-429 Gene denotes PD-1 Gene:100513601
394 468-471 Gene denotes CD8 Gene:925
395 562-565 Gene denotes CD8 Gene:925
398 364-372 Species denotes patients Tax:9606
407 355-363 Disease denotes COVID-19 MESH:C000657245
408 385-387 Disease denotes HD MESH:D006816
409 623-625 Disease denotes HD MESH:D006816

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T102 355-363 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 385-387 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T104 601-603 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T105 623-625 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T162 5-11 http://purl.obolibrary.org/obo/PR_000001015 denotes CD45RA
T163 12-16 http://purl.obolibrary.org/obo/PR_000001963 denotes CD27
T164 17-21 http://purl.obolibrary.org/obo/PR_000001203 denotes CCR7
T165 47-53 http://purl.obolibrary.org/obo/PR_000001015 denotes CD45RA
T166 54-58 http://purl.obolibrary.org/obo/PR_000001963 denotes CD27
T167 59-63 http://purl.obolibrary.org/obo/PR_000001203 denotes CCR7
T168 72-78 http://purl.obolibrary.org/obo/PR_000001015 denotes CD45RA
T169 79-83 http://purl.obolibrary.org/obo/PR_000001963 denotes CD27
T170 84-88 http://purl.obolibrary.org/obo/PR_000001203 denotes CCR7
T171 91-94 http://purl.obolibrary.org/obo/CLO_0002922 denotes EM2
T172 97-103 http://purl.obolibrary.org/obo/PR_000001015 denotes CD45RA
T173 104-108 http://purl.obolibrary.org/obo/PR_000001963 denotes CD27
T174 109-113 http://purl.obolibrary.org/obo/PR_000001203 denotes CCR7
T175 116-119 http://purl.obolibrary.org/obo/CLO_0002923 denotes EM3
T176 133-139 http://purl.obolibrary.org/obo/PR_000001015 denotes CD45RA
T177 140-144 http://purl.obolibrary.org/obo/PR_000001963 denotes CD27
T178 145-149 http://purl.obolibrary.org/obo/PR_000001203 denotes CCR7
T179 162-165 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T180 166-173 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T181 185-188 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T182 189-195 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T183 238-241 http://purl.obolibrary.org/obo/CLO_0002922 denotes EM2
T184 267-268 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 332-337 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T186 428-436 http://purl.obolibrary.org/obo/CLO_0001757 denotes 1+ cells
T187 468-471 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T188 562-565 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T189 566-572 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T190 601-603 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T49 30-38 Chemical denotes effector http://purl.obolibrary.org/obo/CHEBI_35224
T50 385-387 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T51 425-427 Chemical denotes PD http://purl.obolibrary.org/obo/CHEBI_74756
T52 601-603 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T53 623-625 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T34 39-45 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T35 579-585 http://purl.obolibrary.org/obo/GO_0007613 denotes memory

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 66-69 GlycoEpitope denotes EM1 http://www.glycoepitope.jp/epitopes/AN0701
T2 91-94 GlycoEpitope denotes EM2 http://www.glycoepitope.jp/epitopes/AN0703
T3 238-241 GlycoEpitope denotes EM2 http://www.glycoepitope.jp/epitopes/AN0703
T4 281-284 GlycoEpitope denotes EM1 http://www.glycoepitope.jp/epitopes/AN0701
T5 527-530 GlycoEpitope denotes EM1 http://www.glycoepitope.jp/epitopes/AN0701

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T87 175-295 Sentence denotes Among the CD8 T cell populations, there was an increase in the EM2 and EMRA populations and a decrease in EM1 (Fig. 2C).
T88 296-398 Sentence denotes Furthermore, the frequency of CD39+ cells was increased in COVID-19 patients compared to HD (Fig. 2D).
T89 399-542 Sentence denotes Although the frequency of PD-1+ cells was not different in the total CD8 population (Fig. 2D), it was increased for both CM and EM1 (fig. S2A).