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PMC:7376845 / 6858-7471 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T46 38-45 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T47 73-80 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T48 139-143 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T49 294-301 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T50 351-358 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
205 32-37 Gene denotes spike Gene:43740568
216 338-341 Gene denotes Myc Gene:4609
217 349-358 Gene denotes S-protein Gene:43740568
218 435-438 Gene denotes Myc Gene:4609
219 532-535 Gene denotes Myc Gene:4609
220 503-506 Gene denotes Myc Gene:4609
221 71-80 Gene denotes S-protein Gene:43740568
222 60-70 Species denotes SARS-CoV-2 Tax:2697049
223 402-412 Species denotes SARS-CoV-2 Tax:2697049
224 575-580 Chemical denotes HBcAg
225 543-552 Disease denotes hepatitis MESH:D056486

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T104 60-68 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T105 60-64 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T106 402-410 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T107 402-406 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T108 543-554 Disease denotes hepatitis B http://purl.obolibrary.org/obo/MONDO_0005344
T109 543-552 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T88 139-143 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T89 336-337 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 553-554 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T91 555-560 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T92 594-595 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T75 38-45 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T76 73-80 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T77 294-301 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T78 351-358 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T79 566-573 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 144-153 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T51 0-59 Sentence denotes Plasmids for expression of full spike protein and fragments
T52 60-240 Sentence denotes SARS-CoV-2 S-protein-expressing plasmids were codon-optimised and generated by gene synthesis (Bio Basic Asia Pacific, Singapore) according to GenBank accession number: QHD43416.1.
T53 241-424 Sentence denotes One plasmid is for expressing untagged full-length S protein while the other is for expressing a Myc-tagged S-protein fragment consisting of residues 1048–1206 (SARS-CoV-2 numbering).
T54 425-613 Sentence denotes The pXJ40-Myc expression vector was used as an empty vector control and pXJ40-Myc-HBcAg plasmid expressing Myc-tagged hepatitis B virus core antigen (HBcAg) was used as a negative control.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 543-552 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115