PMC:7376845 / 6858-7471 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7376845","sourcedb":"PMC","sourceid":"7376845","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7376845","text":"Plasmids for expression of full spike protein and fragments\nSARS-CoV-2 S-protein-expressing plasmids were codon-optimised and generated by gene synthesis (Bio Basic Asia Pacific, Singapore) according to GenBank accession number: QHD43416.1. One plasmid is for expressing untagged full-length S protein while the other is for expressing a Myc-tagged S-protein fragment consisting of residues 1048–1206 (SARS-CoV-2 numbering). The pXJ40-Myc expression vector was used as an empty vector control and pXJ40-Myc-HBcAg plasmid expressing Myc-tagged hepatitis B virus core antigen (HBcAg) was used as a negative control.","divisions":[{"label":"title","span":{"begin":0,"end":59}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T46","span":{"begin":38,"end":45},"obj":"Body_part"},{"id":"T47","span":{"begin":73,"end":80},"obj":"Body_part"},{"id":"T48","span":{"begin":139,"end":143},"obj":"Body_part"},{"id":"T49","span":{"begin":294,"end":301},"obj":"Body_part"},{"id":"T50","span":{"begin":351,"end":358},"obj":"Body_part"}],"attributes":[{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T46","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"205","span":{"begin":32,"end":37},"obj":"Gene"},{"id":"216","span":{"begin":338,"end":341},"obj":"Gene"},{"id":"217","span":{"begin":349,"end":358},"obj":"Gene"},{"id":"218","span":{"begin":435,"end":438},"obj":"Gene"},{"id":"219","span":{"begin":532,"end":535},"obj":"Gene"},{"id":"220","span":{"begin":503,"end":506},"obj":"Gene"},{"id":"221","span":{"begin":71,"end":80},"obj":"Gene"},{"id":"222","span":{"begin":60,"end":70},"obj":"Species"},{"id":"223","span":{"begin":402,"end":412},"obj":"Species"},{"id":"224","span":{"begin":575,"end":580},"obj":"Chemical"},{"id":"225","span":{"begin":543,"end":552},"obj":"Disease"}],"attributes":[{"id":"A205","pred":"tao:has_database_id","subj":"205","obj":"Gene:43740568"},{"id":"A216","pred":"tao:has_database_id","subj":"216","obj":"Gene:4609"},{"id":"A217","pred":"tao:has_database_id","subj":"217","obj":"Gene:43740568"},{"id":"A218","pred":"tao:has_database_id","subj":"218","obj":"Gene:4609"},{"id":"A219","pred":"tao:has_database_id","subj":"219","obj":"Gene:4609"},{"id":"A220","pred":"tao:has_database_id","subj":"220","obj":"Gene:4609"},{"id":"A221","pred":"tao:has_database_id","subj":"221","obj":"Gene:43740568"},{"id":"A222","pred":"tao:has_database_id","subj":"222","obj":"Tax:2697049"},{"id":"A223","pred":"tao:has_database_id","subj":"223","obj":"Tax:2697049"},{"id":"A225","pred":"tao:has_database_id","subj":"225","obj":"MESH:D056486"},{"subj":"205","pred":"source","obj":"LitCovid-PubTator"},{"subj":"216","pred":"source","obj":"LitCovid-PubTator"},{"subj":"217","pred":"source","obj":"LitCovid-PubTator"},{"subj":"218","pred":"source","obj":"LitCovid-PubTator"},{"subj":"219","pred":"source","obj":"LitCovid-PubTator"},{"subj":"220","pred":"source","obj":"LitCovid-PubTator"},{"subj":"221","pred":"source","obj":"LitCovid-PubTator"},{"subj":"222","pred":"source","obj":"LitCovid-PubTator"},{"subj":"223","pred":"source","obj":"LitCovid-PubTator"},{"subj":"224","pred":"source","obj":"LitCovid-PubTator"},{"subj":"225","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T104","span":{"begin":60,"end":68},"obj":"Disease"},{"id":"T105","span":{"begin":60,"end":64},"obj":"Disease"},{"id":"T106","span":{"begin":402,"end":410},"obj":"Disease"},{"id":"T107","span":{"begin":402,"end":406},"obj":"Disease"},{"id":"T108","span":{"begin":543,"end":554},"obj":"Disease"},{"id":"T109","span":{"begin":543,"end":552},"obj":"Disease"}],"attributes":[{"id":"A104","pred":"mondo_id","subj":"T104","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A105","pred":"mondo_id","subj":"T105","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A106","pred":"mondo_id","subj":"T106","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A107","pred":"mondo_id","subj":"T107","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A108","pred":"mondo_id","subj":"T108","obj":"http://purl.obolibrary.org/obo/MONDO_0005344"},{"id":"A109","pred":"mondo_id","subj":"T109","obj":"http://purl.obolibrary.org/obo/MONDO_0002251"},{"subj":"T104","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T105","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T106","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T107","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T108","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T109","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T88","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T89","span":{"begin":336,"end":337},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T90","span":{"begin":553,"end":554},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T91","span":{"begin":555,"end":560},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T92","span":{"begin":594,"end":595},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T88","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T89","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T90","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T91","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T92","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T75","span":{"begin":38,"end":45},"obj":"Chemical"},{"id":"T76","span":{"begin":73,"end":80},"obj":"Chemical"},{"id":"T77","span":{"begin":294,"end":301},"obj":"Chemical"},{"id":"T78","span":{"begin":351,"end":358},"obj":"Chemical"},{"id":"T79","span":{"begin":566,"end":573},"obj":"Chemical"}],"attributes":[{"id":"A75","pred":"chebi_id","subj":"T75","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A76","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A77","pred":"chebi_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A78","pred":"chebi_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A79","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"},{"subj":"T75","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T76","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T77","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T78","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T79","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":144,"end":153},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T51","span":{"begin":0,"end":59},"obj":"Sentence"},{"id":"T52","span":{"begin":60,"end":240},"obj":"Sentence"},{"id":"T53","span":{"begin":241,"end":424},"obj":"Sentence"},{"id":"T54","span":{"begin":425,"end":613},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T51","pred":"source","obj":"LitCovid-sentences"},{"subj":"T52","pred":"source","obj":"LitCovid-sentences"},{"subj":"T53","pred":"source","obj":"LitCovid-sentences"},{"subj":"T54","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":543,"end":552},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0012115"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-HP"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecda","default":true},{"id":"LitCovid-PubTator","color":"#ecc093"},{"id":"LitCovid-PD-MONDO","color":"#a693ec"},{"id":"LitCovid-PD-CLO","color":"#99ec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93b3"},{"id":"LitCovid-PD-GO-BP","color":"#93cdec"},{"id":"LitCovid-sentences","color":"#e7ec93"},{"id":"LitCovid-PD-HP","color":"#d793ec"}]}]}}