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    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T331","span":{"begin":1855,"end":1859},"obj":"Body_part"},{"id":"T332","span":{"begin":1860,"end":1866},"obj":"Body_part"},{"id":"T333","span":{"begin":1905,"end":1909},"obj":"Body_part"},{"id":"T334","span":{"begin":2046,"end":2052},"obj":"Body_part"},{"id":"T335","span":{"begin":2308,"end":2314},"obj":"Body_part"}],"attributes":[{"id":"A331","pred":"fma_id","subj":"T331","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A332","pred":"fma_id","subj":"T332","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A333","pred":"fma_id","subj":"T333","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A334","pred":"fma_id","subj":"T334","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A335","pred":"fma_id","subj":"T335","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"Acknowledgments\nWe gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based. The list is detailed below. All submitters of data may be contacted directly via www.gisaid.org. We are thankful authors of related accession numbers for designated virus names from different laboratories. Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).\n\nSupplementary Materials\nThe following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1. Table S1. List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences. Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032. Table S3. Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses. Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.\nClick here for additional data file.\n\nAuthor Contributions\nOriginal draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O. All authors have read and agreed to the published version of the manuscript.\n\nFunding\nThis research received no external funding.\n\nConflicts of Interest\nThe authors declare no conflict of interest."}

    LitCovid-PD-UBERON

    {"project":"LitCovid-PD-UBERON","denotations":[{"id":"T67","span":{"begin":1855,"end":1859},"obj":"Body_part"},{"id":"T68","span":{"begin":1860,"end":1866},"obj":"Body_part"},{"id":"T69","span":{"begin":1905,"end":1909},"obj":"Body_part"}],"attributes":[{"id":"A67","pred":"uberon_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A68","pred":"uberon_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A69","pred":"uberon_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"Acknowledgments\nWe gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based. The list is detailed below. All submitters of data may be contacted directly via www.gisaid.org. We are thankful authors of related accession numbers for designated virus names from different laboratories. Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).\n\nSupplementary Materials\nThe following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1. Table S1. List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences. Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032. Table S3. Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses. Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.\nClick here for additional data file.\n\nAuthor Contributions\nOriginal draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O. All authors have read and agreed to the published version of the manuscript.\n\nFunding\nThis research received no external funding.\n\nConflicts of Interest\nThe authors declare no conflict of interest."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T318","span":{"begin":1677,"end":1685},"obj":"Disease"},{"id":"T319","span":{"begin":1835,"end":1843},"obj":"Disease"},{"id":"T320","span":{"begin":2109,"end":2117},"obj":"Disease"},{"id":"T321","span":{"begin":2297,"end":2305},"obj":"Disease"}],"attributes":[{"id":"A318","pred":"mondo_id","subj":"T318","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A319","pred":"mondo_id","subj":"T319","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A320","pred":"mondo_id","subj":"T320","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A321","pred":"mondo_id","subj":"T321","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Acknowledgments\nWe gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based. The list is detailed below. All submitters of data may be contacted directly via www.gisaid.org. We are thankful authors of related accession numbers for designated virus names from different laboratories. Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).\n\nSupplementary Materials\nThe following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1. Table S1. List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences. Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032. Table S3. Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses. Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.\nClick here for additional data file.\n\nAuthor Contributions\nOriginal draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O. All authors have read and agreed to the published version of the manuscript.\n\nFunding\nThis research received no external funding.\n\nConflicts of Interest\nThe authors declare no conflict of interest."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T563","span":{"begin":341,"end":346},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T564","span":{"begin":663,"end":668},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T565","span":{"begin":742,"end":747},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T566","span":{"begin":908,"end":909},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T567","span":{"begin":987,"end":993},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9005"},{"id":"T568","span":{"begin":1017,"end":1023},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9005"},{"id":"T569","span":{"begin":1322,"end":1328},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9005"},{"id":"T570","span":{"begin":1353,"end":1359},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9005"},{"id":"T571","span":{"begin":1651,"end":1653},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T572","span":{"begin":1661,"end":1663},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T573","span":{"begin":1806,"end":1808},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T574","span":{"begin":1806,"end":1808},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T575","span":{"begin":1855,"end":1859},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T576","span":{"begin":1855,"end":1859},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T577","span":{"begin":1905,"end":1909},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T578","span":{"begin":1905,"end":1909},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T579","span":{"begin":2035,"end":2036},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T580","span":{"begin":2152,"end":2154},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T581","span":{"begin":2252,"end":2253},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Acknowledgments\nWe gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based. The list is detailed below. All submitters of data may be contacted directly via www.gisaid.org. We are thankful authors of related accession numbers for designated virus names from different laboratories. Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).\n\nSupplementary Materials\nThe following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1. Table S1. List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences. Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032. Table S3. Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses. Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.\nClick here for additional data file.\n\nAuthor Contributions\nOriginal draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O. All authors have read and agreed to the published version of the manuscript.\n\nFunding\nThis research received no external funding.\n\nConflicts of Interest\nThe authors declare no conflict of interest."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T85930","span":{"begin":1806,"end":1808},"obj":"Chemical"},{"id":"T55233","span":{"begin":1964,"end":1966},"obj":"Chemical"}],"attributes":[{"id":"A67273","pred":"chebi_id","subj":"T85930","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A65142","pred":"chebi_id","subj":"T55233","obj":"http://purl.obolibrary.org/obo/CHEBI_29388"}],"text":"Acknowledgments\nWe gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based. The list is detailed below. All submitters of data may be contacted directly via www.gisaid.org. We are thankful authors of related accession numbers for designated virus names from different laboratories. Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).\n\nSupplementary Materials\nThe following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1. Table S1. List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences. Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032. Table S3. Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses. Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.\nClick here for additional data file.\n\nAuthor Contributions\nOriginal draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O. All authors have read and agreed to the published version of the manuscript.\n\nFunding\nThis research received no external funding.\n\nConflicts of Interest\nThe authors declare no conflict of interest."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T316","span":{"begin":0,"end":15},"obj":"Sentence"},{"id":"T317","span":{"begin":16,"end":175},"obj":"Sentence"},{"id":"T318","span":{"begin":176,"end":203},"obj":"Sentence"},{"id":"T319","span":{"begin":204,"end":272},"obj":"Sentence"},{"id":"T320","span":{"begin":273,"end":381},"obj":"Sentence"},{"id":"T321","span":{"begin":382,"end":1547},"obj":"Sentence"},{"id":"T322","span":{"begin":1549,"end":1572},"obj":"Sentence"},{"id":"T323","span":{"begin":1573,"end":1654},"obj":"Sentence"},{"id":"T324","span":{"begin":1655,"end":1664},"obj":"Sentence"},{"id":"T325","span":{"begin":1665,"end":1799},"obj":"Sentence"},{"id":"T326","span":{"begin":1800,"end":1957},"obj":"Sentence"},{"id":"T327","span":{"begin":1958,"end":1967},"obj":"Sentence"},{"id":"T328","span":{"begin":1968,"end":2144},"obj":"Sentence"},{"id":"T329","span":{"begin":2145,"end":2315},"obj":"Sentence"},{"id":"T330","span":{"begin":2316,"end":2352},"obj":"Sentence"},{"id":"T331","span":{"begin":2354,"end":2374},"obj":"Sentence"},{"id":"T332","span":{"begin":2375,"end":2473},"obj":"Sentence"},{"id":"T333","span":{"begin":2474,"end":2550},"obj":"Sentence"},{"id":"T334","span":{"begin":2552,"end":2559},"obj":"Sentence"},{"id":"T335","span":{"begin":2560,"end":2603},"obj":"Sentence"},{"id":"T336","span":{"begin":2605,"end":2626},"obj":"Sentence"},{"id":"T337","span":{"begin":2627,"end":2671},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Acknowledgments\nWe gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based. The list is detailed below. All submitters of data may be contacted directly via www.gisaid.org. We are thankful authors of related accession numbers for designated virus names from different laboratories. Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).\n\nSupplementary Materials\nThe following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1. Table S1. List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences. Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032. Table S3. Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses. Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.\nClick here for additional data file.\n\nAuthor Contributions\nOriginal draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O. All authors have read and agreed to the published version of the manuscript.\n\nFunding\nThis research received no external funding.\n\nConflicts of Interest\nThe authors declare no conflict of interest."}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"1206","span":{"begin":2157,"end":2164},"obj":"Gene"},{"id":"1207","span":{"begin":1678,"end":1688},"obj":"Species"},{"id":"1208","span":{"begin":2110,"end":2120},"obj":"Species"},{"id":"1209","span":{"begin":2131,"end":2144},"obj":"Species"},{"id":"1210","span":{"begin":2298,"end":2308},"obj":"Species"},{"id":"1211","span":{"begin":1836,"end":1855},"obj":"Disease"},{"id":"1215","span":{"begin":2457,"end":2458},"obj":"Gene"},{"id":"1216","span":{"begin":2451,"end":2452},"obj":"Gene"},{"id":"1217","span":{"begin":2445,"end":2446},"obj":"Gene"}],"attributes":[{"id":"A1206","pred":"tao:has_database_id","subj":"1206","obj":"Gene:102465869"},{"id":"A1207","pred":"tao:has_database_id","subj":"1207","obj":"Tax:2697049"},{"id":"A1208","pred":"tao:has_database_id","subj":"1208","obj":"Tax:2697049"},{"id":"A1209","pred":"tao:has_database_id","subj":"1209","obj":"Tax:11118"},{"id":"A1210","pred":"tao:has_database_id","subj":"1210","obj":"Tax:2697049"},{"id":"A1211","pred":"tao:has_database_id","subj":"1211","obj":"MESH:C000657245"},{"id":"A1215","pred":"tao:has_database_id","subj":"1215","obj":"Gene:43740568"},{"id":"A1216","pred":"tao:has_database_id","subj":"1216","obj":"Gene:43740568"},{"id":"A1217","pred":"tao:has_database_id","subj":"1217","obj":"Gene:43740568"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Acknowledgments\nWe gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based. The list is detailed below. All submitters of data may be contacted directly via www.gisaid.org. We are thankful authors of related accession numbers for designated virus names from different laboratories. Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).\n\nSupplementary Materials\nThe following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1. Table S1. List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences. Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032. Table S3. Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses. Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.\nClick here for additional data file.\n\nAuthor Contributions\nOriginal draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O. All authors have read and agreed to the published version of the manuscript.\n\nFunding\nThis research received no external funding.\n\nConflicts of Interest\nThe authors declare no conflict of interest."}