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PMC:7354481 / 49537-52208 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T331 1855-1859 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T332 1860-1866 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T333 1905-1909 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T334 2046-2052 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T335 2308-2314 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T67 1855-1859 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T68 1860-1866 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T69 1905-1909 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T318 1677-1685 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T319 1835-1843 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T320 2109-2117 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T321 2297-2305 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T563 341-346 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T564 663-668 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T565 742-747 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T566 908-909 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T567 987-993 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T568 1017-1023 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T569 1322-1328 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T570 1353-1359 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T571 1651-1653 http://purl.obolibrary.org/obo/CLO_0050050 denotes s1
T572 1661-1663 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T573 1806-1808 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T574 1806-1808 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T575 1855-1859 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T576 1855-1859 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T577 1905-1909 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T578 1905-1909 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T579 2035-2036 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T580 2152-2154 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T581 2252-2253 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T85930 1806-1808 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T55233 1964-1966 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T316 0-15 Sentence denotes Acknowledgments
T317 16-175 Sentence denotes We gratefully acknowledge the authors, originating and submitting laboratories of the sequences from GISAID’s EpiFlu™ Database on which this research is based.
T318 176-203 Sentence denotes The list is detailed below.
T319 204-272 Sentence denotes All submitters of data may be contacted directly via www.gisaid.org.
T320 273-381 Sentence denotes We are thankful authors of related accession numbers for designated virus names from different laboratories.
T321 382-1547 Sentence denotes Monica Galiano, Shahjahan Miah, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Richard Myers, Steven Platt, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon (EPI_ISL_420910 hCoV-19/England/20136087804/2020 Europe/United Kingdom/England 2020-03-25 Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England); Shaikh Terkis Islam Pavel, Hazel Yetiskin, Gunsu Aydin, Can Holyavkin, Muhammet Ali Uygut, Zehra B Dursun, İlhami Celik, Alper Iseri, Aykut Ozdarendeli (EPI_ISL_424366 hCoV-19/Turkey/ERAGEM-001/2020 Europe/Turkey/Kayseri2020-03-17 Vaccine Research, Development and Application Center, Erciyes UniversityGen Era Diagnostics Inc.); Ilker Karacan, Tugba Kizilboga Akgun, Bugra Agaoglu, Gizem Alkurt, Jale Yildiz, Betsi Köse, Elifnaz Çelik, Mehtap Aydın, Levent Doganay, Gizem Dinler Doganay (EPI_ISL_427391hCoV-19/Turkey/GLAB-CoV008/2020 Europe/Turkey/Istanbul 2020-04-13 Genomic Laboratory (GLAB) (Conjoint lab of Health Directorate of Istanbul and Istanbul Technical University) Genomic Laboratory (GLAB), Istanbul Technical University).
T322 1549-1572 Sentence denotes Supplementary Materials
T323 1573-1654 Sentence denotes The following are available online at https://www.mdpi.com/1999-4915/12/6/614/s1.
T324 1655-1664 Sentence denotes Table S1.
T325 1665-1799 Sentence denotes List of the SARS-CoV-2 strains isolated from different geographical regions that included for the conservation of miR mimic sequences.
T326 1800-1957 Sentence denotes Table S2.Upregulated pathways from SARS-CoV-2 infected lung tissue biopsies when compared to the healthy lung biopsies, obtained from Bioproject PRJNA615032.
T327 1958-1967 Sentence denotes Table S3.
T328 1968-2144 Sentence denotes Segments spanning the putative viral miR sequences were taken from a complete genome multiple sequence alignment of geographically different SARS-CoV-2 and other coronaviruses.
T329 2145-2315 Sentence denotes Figure S1. miR8067 structure is drawn with miREval algorithm (http://mimirna.centenary.org.au/mireval/) as a stem loop prediction sequence found on the SARS-CoV-2 genome.
T330 2316-2352 Sentence denotes Click here for additional data file.
T331 2354-2374 Sentence denotes Author Contributions
T332 2375-2473 Sentence denotes Original draft preparation, review and editing, E.D.A., A.D., G.H.G., S.A., S.C., S.L. and P.U.-O.
T333 2474-2550 Sentence denotes All authors have read and agreed to the published version of the manuscript.
T334 2552-2559 Sentence denotes Funding
T335 2560-2603 Sentence denotes This research received no external funding.
T336 2605-2626 Sentence denotes Conflicts of Interest
T337 2627-2671 Sentence denotes The authors declare no conflict of interest.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1206 2157-2164 Gene denotes iR8067 Gene:102465869
1207 1678-1688 Species denotes ARS-CoV-2 Tax:2697049
1208 2110-2120 Species denotes ARS-CoV-2 Tax:2697049
1209 2131-2144 Species denotes oronaviruses. Tax:11118
1210 2298-2308 Species denotes ARS-CoV-2 Tax:2697049
1211 1836-1855 Disease denotes ARS-CoV-2 infected MESH:C000657245
1215 2457-2458 Gene denotes S Gene:43740568
1216 2451-2452 Gene denotes S Gene:43740568
1217 2445-2446 Gene denotes S Gene:43740568