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PMC:7352545 / 82498-86766 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T247 613-615 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T248 617-628 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T249 1168-1192 https://glytoucan.org/Structures/Glycans/G50850NI denotes N-acetyl neuraminic acid
T250 1168-1192 https://glytoucan.org/Structures/Glycans/G81533KY denotes N-acetyl neuraminic acid
T251 1966-1972 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T252 1974-1997 https://glytoucan.org/Structures/Glycans/G50850NI denotes N-acetylneuraminic acid
T253 1974-1997 https://glytoucan.org/Structures/Glycans/G81533KY denotes N-acetylneuraminic acid
T254 2020-2043 https://glytoucan.org/Structures/Glycans/G50850NI denotes N-acetylneuraminic acid
T255 2020-2043 https://glytoucan.org/Structures/Glycans/G81533KY denotes N-acetylneuraminic acid
T256 2158-2181 https://glytoucan.org/Structures/Glycans/G50850NI denotes N-acetylneuraminic acid
T257 2158-2181 https://glytoucan.org/Structures/Glycans/G81533KY denotes N-acetylneuraminic acid
T258 2432-2434 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T259 2451-2453 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T260 2692-2696 https://glytoucan.org/Structures/Glycans/G00054MO denotes SLeX
T261 2738-2758 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyl-lactosamine
T262 2822-2829 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T782 943-955 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T783 1041-1048 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T784 1073-1080 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T785 1081-1093 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T786 1111-1118 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T787 1119-1126 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T788 1168-1192 Body_part denotes N-acetyl neuraminic acid http://purl.org/sig/ont/fma/fma82788
T789 1348-1351 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T790 1362-1365 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T791 1414-1426 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T792 1446-1458 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T793 1459-1461 Body_part denotes ER http://purl.org/sig/ont/fma/fma63842
T794 1463-1484 Body_part denotes endoplasmic reticulum http://purl.org/sig/ont/fma/fma63842
T795 1492-1513 Body_part denotes endoplasmic reticulum http://purl.org/sig/ont/fma/fma63842
T796 1533-1544 Body_part denotes compartment http://purl.org/sig/ont/fma/fma76577
T797 1564-1571 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T798 1810-1813 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T799 1820-1828 Body_part denotes glycogen http://purl.org/sig/ont/fma/fma82747
T800 1853-1855 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T801 1897-1899 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T802 1974-1997 Body_part denotes N-acetylneuraminic acid http://purl.org/sig/ont/fma/fma82788
T803 2020-2043 Body_part denotes N-acetylneuraminic acid http://purl.org/sig/ont/fma/fma82788
T804 2158-2181 Body_part denotes N-acetylneuraminic acid http://purl.org/sig/ont/fma/fma82788
T805 2197-2204 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T806 2259-2273 Body_part denotes red blood cell http://purl.org/sig/ont/fma/fma62845
T807 2269-2273 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T808 2279-2291 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T809 2399-2421 Body_part denotes cell adhesion molecule http://purl.org/sig/ont/fma/fma67214
T810 2399-2403 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T811 2651-2663 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T812 2822-2829 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T813 2840-2847 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T814 2902-2905 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T815 2909-2941 Body_part denotes major histocompatibility complex http://purl.org/sig/ont/fma/fma84079
T816 2950-2952 Body_part denotes DC http://purl.org/sig/ont/fma/fma273565
T817 2959-2974 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T818 2969-2974 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T819 3039-3043 Body_part denotes HSPG http://purl.org/sig/ont/fma/fma82834
T820 3045-3073 Body_part denotes heparan sulfate proteoglycan http://purl.org/sig/ont/fma/fma82834
T821 3092-3099 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T822 3189-3198 Body_part denotes G protein http://purl.org/sig/ont/fma/fma61788
T823 3325-3331 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T824 3434-3444 Body_part denotes hepatocyte http://purl.org/sig/ont/fma/fma14515
T825 3505-3511 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T826 3579-3593 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871
T827 3594-3601 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T828 3616-3623 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T829 3713-3720 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T830 3728-3731 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T831 3743-3745 Body_part denotes ER http://purl.org/sig/ont/fma/fma63842
T832 3902-3905 Body_part denotes GAG http://purl.org/sig/ont/fma/fma63011
T833 3907-3924 Body_part denotes glycosaminoglycan http://purl.org/sig/ont/fma/fma63011
T834 4151-4162 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T835 4181-4192 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T44 2263-2268 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T45 3103-3106 Body_part denotes RAS http://purl.obolibrary.org/obo/UBERON_0018229
T46 3108-3132 Body_part denotes renin-angiotensin system http://purl.obolibrary.org/obo/UBERON_0018229

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3243 2044-2049 Gene denotes CasD1 Gene:64921
3244 2618-2634 Gene denotes aminopeptidase N Gene:290
3245 2886-2890 Gene denotes hAPN Gene:290
3246 2984-3017 Gene denotes intercellular adhesion molecule-3 Gene:3385
3247 3074-3079 Gene denotes HSPA5 Gene:3309
3248 3270-3293 Gene denotes TNF-α-converting enzyme Gene:6868
3249 3477-3498 Gene denotes trypsin-like protease Gene:11012
3250 3499-3503 Gene denotes MSPL Gene:84000
3251 3545-3549 Gene denotes DPP4 Gene:1803
3252 3574-3577 Gene denotes BiP Gene:3309
3253 3633-3637 Gene denotes ATF6 Gene:22926
3254 3673-3677 Gene denotes IRE1 Gene:2081
3255 3733-3736 Gene denotes PKR Gene:5610
3256 1200-1201 Gene denotes N Gene:43740575
3257 1168-1169 Gene denotes N Gene:43740575
3258 3039-3043 Gene denotes HSPG Gene:6383
3259 3713-3731 Gene denotes protein kinase RNA Gene:5610
3260 1735-1738 Gene denotes CTD Gene:1283
3261 2451-2453 Gene denotes SA Gene:6296
3262 2432-2434 Gene denotes SA Gene:6296
3263 613-615 Gene denotes SA Gene:6296
3264 629-637 Species denotes SARS-CoV Tax:694009
3265 639-692 Species denotes severe acute respiratory syndrome-related coronavirus Tax:694009
3266 745-772 Species denotes respiratory syncytial virus Tax:12814
3267 804-813 Species denotes 2019-nCoV Tax:2697049
3268 815-837 Species denotes 2019-Novel Coronavirus Tax:2697049
3269 1308-1313 Species denotes human Tax:9606
3270 1314-1317 Species denotes CoV Tax:11118
3271 2076-2080 Species denotes ISAV Tax:55987
3272 2243-2249 Species denotes bovine Tax:9913
3273 2250-2253 Species denotes CoV Tax:11118
3274 2454-2458 Species denotes PHEV Tax:42005
3275 2460-2508 Species denotes porcine hemagglutinating encephalomyelitis virus Tax:42005
3276 2515-2518 Species denotes rat Tax:10116
3277 2519-2522 Species denotes CoV Tax:11118
3278 2523-2527 Species denotes TGEV Tax:11149
3279 2892-2897 Species denotes human Tax:9606
3280 3464-3469 Species denotes human Tax:9606
3281 3783-3787 Species denotes PEDV Tax:28295
3282 3833-3837 Species denotes FIPV Tax:11135
3283 713-724 Species denotes respiratory Tax:12814
3284 1948-1957 Species denotes Newcastle Tax:11176
3285 2610-2617 Species denotes porcine Tax:237020
3286 3789-3796 Species denotes porcine Tax:237020
3287 740-743 Species denotes RSV Tax:12814
3288 2338-2341 Species denotes MHV Tax:11138
3289 2726-2730 Gene denotes α2,3 Gene:28923
3290 3551-3573 Gene denotes dipeptidyl peptidase-4 Gene:1803
3291 3459-3462 Gene denotes HAT Gene:9407
3292 2117-2125 Gene denotes factor H Gene:3075
3293 3264-3268 Gene denotes TACE Gene:6868
3294 555-577 Gene denotes hemagglutinin-esterase Gene:17603139
3295 2822-2829 Chemical denotes glucose MESH:D005947
3296 3325-3331 Chemical denotes serine MESH:D012694
3297 3505-3511 Chemical denotes serine MESH:D012694
3298 4119-4125 Chemical denotes CLQ-OH
3299 588-612 Disease denotes coronavirus disease 2019 MESH:C000657245
3300 2093-2115 Disease denotes salmon anemia virus FH MESH:D000740
3301 2350-2390 Disease denotes hepatitis virus CEACAM carcinoembryonic MESH:D006525
3302 2543-2608 Disease denotes gastroenteritis coronavirus IBV infectious bronchitis virus pAPN MESH:D001991
3303 3806-3832 Disease denotes diarrhea coronavirus virus MESH:D003967
3304 3857-3879 Disease denotes peritonitis virus FeCV MESH:D010534
3305 2182-2189 CellLine denotes HEF HE CVCL:2922

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T342 454-458 Disease denotes MEST http://purl.obolibrary.org/obo/MONDO_0002386
T343 578-586 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T344 588-612 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T345 629-637 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T346 639-672 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T347 809-819 Disease denotes nCoV 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T348 1712-1715 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T350 1948-1965 Disease denotes Newcastle disease http://purl.obolibrary.org/obo/MONDO_0005875
T351 2082-2092 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T352 2100-2106 Disease denotes anemia http://purl.obolibrary.org/obo/MONDO_0002280
T353 2113-2115 Disease denotes FH http://purl.obolibrary.org/obo/MONDO_0016525
T354 2350-2359 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T355 2485-2502 Disease denotes encephalomyelitis http://purl.obolibrary.org/obo/MONDO_0005156
T356 2543-2558 Disease denotes gastroenteritis http://purl.obolibrary.org/obo/MONDO_0002269
T357 2576-2586 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T358 2587-2597 Disease denotes bronchitis http://purl.obolibrary.org/obo/MONDO_0003781
T359 3459-3462 Disease denotes HAT http://purl.obolibrary.org/obo/MONDO_0018048
T360 3806-3814 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T361 3839-3868 Disease denotes feline infectious peritonitis http://purl.obolibrary.org/obo/MONDO_0025491
T362 3846-3856 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T363 3857-3868 Disease denotes peritonitis http://purl.obolibrary.org/obo/MONDO_0004522
T364 4146-4149 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1129 52-53 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1130 734-739 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1131 767-772 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1132 791-803 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T1133 1227-1229 http://purl.obolibrary.org/obo/CLO_0009141 denotes ST
T1134 1227-1229 http://purl.obolibrary.org/obo/CLO_0050980 denotes ST
T1135 1294-1301 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T1136 1308-1313 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T1137 1430-1438 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T1138 1905-1910 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1139 2051-2055 http://purl.obolibrary.org/obo/CLO_0002200 denotes Cas1
T1140 2107-2112 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1141 2254-2257 http://purl.obolibrary.org/obo/CL_0000232 denotes RBC
T1142 2259-2273 http://purl.obolibrary.org/obo/CL_0000232 denotes red blood cell
T1143 2360-2365 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1144 2399-2403 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1145 2503-2508 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1146 2598-2603 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1147 2795-2803 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T1148 2892-2897 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T1149 2950-2952 http://purl.obolibrary.org/obo/CL_0000451 denotes DC
T1150 2959-2974 http://purl.obolibrary.org/obo/CL_0000451 denotes dendritic cells
T1151 3045-3073 http://purl.obolibrary.org/obo/PR_000001307 denotes heparan sulfate proteoglycan
T1152 3183-3187 http://purl.obolibrary.org/obo/PR_000030035 denotes GPCR
T1153 3189-3215 http://purl.obolibrary.org/obo/PR_000030035 denotes G protein-coupled receptor
T1154 3222-3223 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T1155 3378-3387 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T1156 3429-3432 http://purl.obolibrary.org/obo/CLO_0003740 denotes HGF
T1157 3464-3469 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T1158 3470-3476 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T1159 3639-3649 http://purl.obolibrary.org/obo/CLO_0001658 denotes activating
T1160 3827-3832 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1161 3869-3874 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1162 3896-3901 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1163 4241-4246 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T51233 613-615 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T661 617-628 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T662 624-628 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T31345 903-909 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T664 943-955 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T65273 1011-1023 Chemical denotes sphingolipid http://purl.obolibrary.org/obo/CHEBI_26739
T666 1036-1039 Chemical denotes PGI http://purl.obolibrary.org/obo/CHEBI_26345
T45639 1041-1048 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T668 1073-1080 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T669 1081-1093 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T670 1106-1109 Chemical denotes PPI http://purl.obolibrary.org/obo/CHEBI_53266|http://purl.obolibrary.org/obo/CHEBI_60614
T45315 1111-1118 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T673 1119-1126 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T674 1139-1143 Chemical denotes NeuC http://purl.obolibrary.org/obo/CHEBI_7539
T675 1145-1160 Chemical denotes neuraminic acid http://purl.obolibrary.org/obo/CHEBI_49018
T676 1156-1160 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T66370 1161-1166 Chemical denotes NeuAc http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_49018
T98206 1168-1192 Chemical denotes N-acetyl neuraminic acid http://purl.obolibrary.org/obo/CHEBI_17012
T680 1170-1176 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T682 1177-1192 Chemical denotes neuraminic acid http://purl.obolibrary.org/obo/CHEBI_49018
T683 1188-1192 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T1666 1193-1198 Chemical denotes NeuGc http://purl.obolibrary.org/obo/CHEBI_62084
T685 1202-1210 Chemical denotes glycolyl http://purl.obolibrary.org/obo/CHEBI_30884
T686 1211-1226 Chemical denotes neuraminic acid http://purl.obolibrary.org/obo/CHEBI_49018
T687 1222-1226 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T688 1227-1229 Chemical denotes ST http://purl.obolibrary.org/obo/CHEBI_141393
T35453 1414-1426 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T18519 1446-1458 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T68880 1564-1571 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T45568 1609-1611 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T4038 1633-1636 Chemical denotes ADP http://purl.obolibrary.org/obo/CHEBI_16761|http://purl.obolibrary.org/obo/CHEBI_456216|http://purl.obolibrary.org/obo/CHEBI_73342
T78300 1637-1643 Chemical denotes ribose http://purl.obolibrary.org/obo/CHEBI_33942|http://purl.obolibrary.org/obo/CHEBI_47013
T699 1820-1828 Chemical denotes glycogen http://purl.obolibrary.org/obo/CHEBI_28087
T700 1925-1927 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T701 1966-1972 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T703 1974-1997 Chemical denotes N-acetylneuraminic acid http://purl.obolibrary.org/obo/CHEBI_17012
T82544 1993-1997 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T705 2013-2019 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T96736 2020-2043 Chemical denotes N-acetylneuraminic acid http://purl.obolibrary.org/obo/CHEBI_17012
T96172 2039-2043 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T99755 2113-2115 Chemical denotes FH http://purl.obolibrary.org/obo/CHEBI_73634
T99252 2140-2149 Chemical denotes acetamido http://purl.obolibrary.org/obo/CHEBI_48374
T29013 2158-2181 Chemical denotes N-acetylneuraminic acid http://purl.obolibrary.org/obo/CHEBI_17012
T712 2177-2181 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T55955 2197-2204 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T714 2220-2226 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T716 2231-2236 Chemical denotes NeuAc http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_49018
T75129 2279-2291 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T15383 2391-2398 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T72839 2413-2421 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T28997 2432-2434 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T726 2451-2453 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T54621 2651-2663 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T732 2670-2691 Chemical denotes p-nitrophenyl acetate http://purl.obolibrary.org/obo/CHEBI_82635
T733 2670-2683 Chemical denotes p-nitrophenyl http://purl.obolibrary.org/obo/CHEBI_61595
T734 2684-2691 Chemical denotes acetate http://purl.obolibrary.org/obo/CHEBI_30089|http://purl.obolibrary.org/obo/CHEBI_47622
T75133 2738-2758 Chemical denotes N-acetyl-lactosamine http://purl.obolibrary.org/obo/CHEBI_16153
T737 2740-2746 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T739 2747-2758 Chemical denotes lactosamine http://purl.obolibrary.org/obo/CHEBI_25001
T28782 2822-2829 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T63717 2840-2847 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T743 2854-2865 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T96414 3007-3015 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T745 3045-3073 Chemical denotes heparan sulfate proteoglycan http://purl.obolibrary.org/obo/CHEBI_24499
T746 3045-3060 Chemical denotes heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T747 3045-3052 Chemical denotes heparan http://purl.obolibrary.org/obo/CHEBI_24500
T748 3053-3060 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T44469 3061-3073 Chemical denotes proteoglycan http://purl.obolibrary.org/obo/CHEBI_37396
T32948 3092-3099 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T751 3103-3106 Chemical denotes RAS http://purl.obolibrary.org/obo/CHEBI_63620
T76498 3114-3125 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T85119 3140-3151 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T59539 3164-3166 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T755 3191-3198 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T75563 3325-3331 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T757 3343-3345 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T758 3346-3348 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T760 3349-3352 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T762 3399-3402 Chemical denotes MMP http://purl.obolibrary.org/obo/CHEBI_340824|http://purl.obolibrary.org/obo/CHEBI_59761
T15680 3505-3511 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T32996 3520-3544 Chemical denotes bromhexine hydrochloride http://purl.obolibrary.org/obo/CHEBI_31303
T51003 3520-3530 Chemical denotes bromhexine http://purl.obolibrary.org/obo/CHEBI_77032
T60579 3531-3544 Chemical denotes hydrochloride http://purl.obolibrary.org/obo/CHEBI_36807
T7470 3594-3601 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T18697 3616-3623 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T770 3679-3687 Chemical denotes inositol http://purl.obolibrary.org/obo/CHEBI_24848
T771 3707-3711 Chemical denotes PERK http://purl.obolibrary.org/obo/CHEBI_17300
T772 3713-3720 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T773 3902-3905 Chemical denotes GAG http://purl.obolibrary.org/obo/CHEBI_143889|http://purl.obolibrary.org/obo/CHEBI_18085
T775 3907-3924 Chemical denotes glycosaminoglycan http://purl.obolibrary.org/obo/CHEBI_18085
T776 3931-3933 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T777 3967-3969 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T778 4003-4005 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T37238 4107-4118 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T780 4127-4145 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T58128 4151-4162 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T782 4181-4192 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T151 1587-1600 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T152 1587-1600 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T153 1647-1658 http://purl.obolibrary.org/obo/GO_0016791 denotes phosphatase
T154 2399-2421 http://purl.obolibrary.org/obo/GO_0098631 denotes cell adhesion molecule
T155 2399-2412 http://purl.obolibrary.org/obo/GO_0007155 denotes cell adhesion
T156 2909-2941 http://purl.obolibrary.org/obo/GO_0046776 denotes major histocompatibility complex
T157 3445-3451 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T158 3650-3670 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factor
T159 3650-3663 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T790 0-15 Sentence denotes Acknowledgments
T791 16-174 Sentence denotes This study was in part supported by a grant (NRF-2018R1D1A1A09081927 to CHK) of the Basic Science Research Program through National Research Foundation (NRF).
T792 176-196 Sentence denotes Author Contributions
T793 197-306 Sentence denotes Conceptualization, C.-H.K.; writing—original draft preparation, C.-H.K.; writing, review and editing, C.-H.K.
T794 307-383 Sentence denotes All authors have read and agreed to the published version of the manuscript.
T795 385-392 Sentence denotes Funding
T796 393-467 Sentence denotes Funded by the Ministry of Education, Science and Technology (MEST), Korea.
T797 469-490 Sentence denotes Conflicts of Interest
T798 491-536 Sentence denotes The author declares no conflicts of interest.
T799 537-550 Sentence denotes Abbreviations
T800 551-577 Sentence denotes HE hemagglutinin-esterase
T801 578-612 Sentence denotes COVID-19 coronavirus disease 2019
T802 613-628 Sentence denotes SA sialic acid
T803 629-692 Sentence denotes SARS-CoV severe acute respiratory syndrome-related coronavirus
T804 693-739 Sentence denotes MERS-V Middle East respiratory syndrome virus
T805 740-772 Sentence denotes RSV respiratory syncytial virus
T806 773-803 Sentence denotes WHO World Health Organization
T807 804-837 Sentence denotes 2019-nCoV 2019-Novel Coronavirus
T808 838-865 Sentence denotes GIT gastrointestinal track
T809 866-897 Sentence denotes RDE receptor-destroying enzyme
T810 898-930 Sentence denotes LRI ligand–receptor interaction
T811 931-967 Sentence denotes LCI lectin–carbohydrate interaction
T812 968-998 Sentence denotes LGI lectin–glycan interaction
T813 999-1035 Sentence denotes LSI lectin–sphingolipid interaction
T814 1036-1067 Sentence denotes PGI protein–glycan interaction
T815 1068-1105 Sentence denotes PCI protein–carbohydrate interaction
T816 1106-1138 Sentence denotes PPI protein–protein interaction
T817 1139-1160 Sentence denotes NeuC neuraminic acid
T818 1161-1192 Sentence denotes NeuAc N-acetyl neuraminic acid
T819 1193-1226 Sentence denotes NeuGc N-glycolyl neuraminic acid
T820 1227-1248 Sentence denotes ST sialyltransferase
T821 1249-1301 Sentence denotes ICTV International Committee on Taxonomy of Viruses
T822 1302-1317 Sentence denotes HCoV human CoV
T823 1318-1341 Sentence denotes ORF open reading frame
T824 1342-1376 Sentence denotes RdRp RNA-dependent RNA polymerase
T825 1377-1388 Sentence denotes E envelope
T826 1389-1404 Sentence denotes N nucleocapsid
T827 1405-1426 Sentence denotes S spike glycoprotein
T828 1427-1458 Sentence denotes M membrane matrix glycoprotein
T829 1459-1484 Sentence denotes ER endoplasmic reticulum
T830 1485-1544 Sentence denotes ERGIC endoplasmic reticulum-Golgi intermediate compartment
T831 1545-1571 Sentence denotes Nsp nonstructural protein
T832 1572-1608 Sentence denotes RTC replicase–transcriptase complex
T833 1609-1626 Sentence denotes TM transmembrane
T834 1627-1658 Sentence denotes ADRP ADP-ribose-1′-phosphatase
T835 1659-1686 Sentence denotes PLpro papain-like protease
T836 1687-1711 Sentence denotes MTase methyltransferase
T837 1712-1734 Sentence denotes NTD N-terminal domain
T838 1735-1757 Sentence denotes CTD C-terminal domain
T839 1758-1786 Sentence denotes RBD receptor-binding domain
T840 1787-1813 Sentence denotes ssRNA single stranded RNA
T841 1814-1846 Sentence denotes GSK3 glycogen synthase kinase 3
T842 1847-1899 Sentence denotes hnRNP A1 heterogeneous nuclear ribonucleoprotein A1
T843 1900-1924 Sentence denotes VLP virus-like particle
T844 1925-1942 Sentence denotes NA neuraminidase
T845 1943-1965 Sentence denotes NDV Newcastle disease
T846 1966-1997 Sentence denotes Neu5Ac N-acetylneuraminic acid
T847 1998-2043 Sentence denotes Neu5:9Ac2 9-O-acetyl-N-acetylneuraminic acid
T848 2044-2075 Sentence denotes CasD1 Cas1 domain containing 1
T849 2076-2112 Sentence denotes ISAV infectious salmon anemia virus
T850 2113-2125 Sentence denotes FH factor H
T851 2126-2181 Sentence denotes Neu5Ac9NAc 9-acetamido-9-deoxy-N-acetylneuraminic acid
T852 2182-2204 Sentence denotes HEF HE fusion protein
T853 2205-2236 Sentence denotes Neu5:9Ac2 5-N-acetyl-9-O-NeuAc
T854 2237-2253 Sentence denotes BCoV bovine CoV
T855 2254-2273 Sentence denotes RBC red blood cell
T856 2274-2310 Sentence denotes CRD carbohydrate-recognizing domain
T857 2311-2337 Sentence denotes GBD glycan-binding domain
T858 2338-2365 Sentence denotes MHV murine hepatitis virus
T859 2366-2424 Sentence denotes CEACAM carcinoembryonic antigen cell adhesion molecule 1a
T860 2425-2453 Sentence denotes 9-O–AC-SA 9-O-acetylated SA
T861 2454-2508 Sentence denotes PHEV porcine hemagglutinating encephalomyelitis virus
T862 2509-2522 Sentence denotes RCoV rat CoV
T863 2523-2570 Sentence denotes TGEV transmissible gastroenteritis coronavirus
T864 2571-2603 Sentence denotes IBV infectious bronchitis virus
T865 2604-2634 Sentence denotes pAPN porcine aminopeptidase N
T866 2635-2663 Sentence denotes MGP mucin-like glycoprotein
T867 2664-2691 Sentence denotes pNPA p-nitrophenyl acetate
T868 2692-2711 Sentence denotes SLeX sialyl-LewisX
T869 2712-2758 Sentence denotes α2:3-SlacNAc α2,3-sialyl-N-acetyl-lactosamine
T870 2759-2787 Sentence denotes DPP4 dipeptidyl peptidase 4
T871 2788-2847 Sentence denotes GRP78 membrane-associated 78-kDa glucose-regulated protein
T872 2848-2885 Sentence denotes ACE2 angiotensin-converting enzyme 2
T873 2886-2901 Sentence denotes hAPN human APN
T874 2902-2949 Sentence denotes MHC-I major histocompatibility complex class I
T875 2950-3038 Sentence denotes DC-SIGN dendritic cells-specific intercellular adhesion molecule-3-grabbing nonintegrin
T876 3039-3073 Sentence denotes HSPG heparan sulfate proteoglycan
T877 3074-3102 Sentence denotes HSPA5 heat shock protein A5
T878 3103-3132 Sentence denotes RAS renin-angiotensin system
T879 3133-3153 Sentence denotes Ang I angiotensin I
T880 3154-3182 Sentence denotes AT1R Ang II receptor type 1
T881 3183-3215 Sentence denotes GPCR G protein-coupled receptor
T882 3216-3263 Sentence denotes ADAM A disintegrin and metallopeptidase domain
T883 3264-3293 Sentence denotes TACE TNF-α-converting enzyme
T884 3294-3331 Sentence denotes TMPRSS transmembrane protease serine
T885 3332-3361 Sentence denotes TTSP type II TM Ser protease
T886 3362-3398 Sentence denotes PAR-2 protease activated receptor 2
T887 3399-3428 Sentence denotes MMP matrix metalloproteinase
T888 3429-3458 Sentence denotes HGF hepatocyte growth factor
T889 3459-3498 Sentence denotes HAT human airway trypsin-like protease
T890 3499-3514 Sentence denotes MSPL serine 13
T891 3515-3544 Sentence denotes BHH bromhexine hydrochloride
T892 3545-3573 Sentence denotes DPP4 dipeptidyl peptidase-4
T893 3574-3601 Sentence denotes BiP immunoglobulin protein
T894 3602-3632 Sentence denotes UPR unfolded protein response
T895 3633-3672 Sentence denotes ATF6 activating transcription factor 6
T896 3673-3706 Sentence denotes IRE1 inositol-requiring enzyme 1
T897 3707-3752 Sentence denotes PERK protein kinase RNA (PKR)-like ER kinase
T898 3753-3782 Sentence denotes SBD substrate-binding domain
T899 3783-3832 Sentence denotes PEDV porcine epidemic diarrhea coronavirus virus
T900 3833-3874 Sentence denotes FIPV feline infectious peritonitis virus
T901 3875-3901 Sentence denotes FeCV feline enteric virus
T902 3902-3924 Sentence denotes GAG glycosaminoglycan
T903 3925-3958 Sentence denotes GlcAT-II glucuronosyltransferase
T904 3959-4005 Sentence denotes GlcNAcT-II N-acetylglucosaminyltransferase II
T905 4006-4036 Sentence denotes NGS new generation sequencing
T906 4037-4064 Sentence denotes RBM receptor-binding motif
T907 4065-4101 Sentence denotes 3CLpro 3-chymotrypsin-like protease
T908 4102-4118 Sentence denotes CLQ chloroquine
T909 4119-4145 Sentence denotes CLQ-OH hydroxychloroquine
T910 4146-4175 Sentence denotes GBS ganglioside-binding site
T911 4176-4207 Sentence denotes GBD ganglioside-binding domain
T912 4208-4233 Sentence denotes WEF World Economic Forum
T913 4234-4268 Sentence denotes VODAN Virus Outbreak Data Network

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T27 3045-3060 GlycoEpitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T26 2100-2106 Phenotype denotes anemia http://purl.obolibrary.org/obo/HP_0001903
T27 2350-2359 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115
T28 2587-2597 Phenotype denotes bronchitis http://purl.obolibrary.org/obo/HP_0012387
T29 3086-3091 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T30 3806-3814 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T31 3857-3868 Phenotype denotes peritonitis http://purl.obolibrary.org/obo/HP_0002586