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PMC:7352545 / 22147-23214 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T66 55-61 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T67 63-65 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T68 103-105 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T69 135-141 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T70 344-350 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T71 415-418 https://glytoucan.org/Structures/Glycans/G56516VH denotes GM3
T72 415-418 https://glytoucan.org/Structures/Glycans/G91237TK denotes GM3
T73 482-488 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T74 730-736 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T75 868-874 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T76 929-931 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T77 993-999 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T78 1016-1018 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T211 177-179 Body_part denotes A2 http://purl.org/sig/ont/fma/fma66595
T212 403-414 Body_part denotes erythrocyte http://purl.org/sig/ont/fma/fma62845
T213 545-550 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T214 680-688 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T84 167-176 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T85 561-570 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T86 580-590 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T87 598-604 Disease denotes anemia http://purl.obolibrary.org/obo/MONDO_0002280
T88 831-840 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T261 20-25 http://purl.obolibrary.org/obo/NCBITaxon_9796 denotes horse
T262 27-29 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T263 119-121 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T264 177-179 http://purl.obolibrary.org/obo/CLO_0001562 denotes A2
T265 180-185 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T266 304-306 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T267 332-334 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T268 396-402 http://purl.obolibrary.org/obo/NCBITaxon_9796 denotes equine
T269 403-414 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocyte
T270 429-430 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T271 443-447 http://purl.obolibrary.org/obo/NCBITaxon_117565 denotes fish
T272 466-468 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T273 527-534 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T274 545-550 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T275 573-578 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T276 605-610 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T277 619-620 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T278 700-705 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T279 722-724 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T280 843-848 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T281 915-917 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T282 954-955 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T283 1041-1042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T284 1063-1065 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T535 32-38 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T537 55-61 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T539 63-65 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T544 103-105 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T549 135-141 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T551 186-188 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T552 205-213 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T553 222-226 Chemical denotes NaOH http://purl.obolibrary.org/obo/CHEBI_32145
T554 230-235 Chemical denotes NaIO4 http://purl.obolibrary.org/obo/CHEBI_75226
T555 309-321 Chemical denotes acetyl group http://purl.obolibrary.org/obo/CHEBI_40574
T556 309-315 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_46887
T557 316-321 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T558 337-343 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T560 344-350 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T562 415-418 Chemical denotes GM3 http://purl.obolibrary.org/obo/CHEBI_15681|http://purl.obolibrary.org/obo/CHEBI_84118
T564 482-488 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T566 680-688 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T567 727-729 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T569 730-736 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T571 865-867 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T573 868-874 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T575 920-922 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T577 929-931 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T582 990-992 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T584 993-999 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T586 1016-1018 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T213 0-114 Sentence denotes For example, in the horse, C4-O-acetyl modification of Neu5Ac (SA) occupies more than 50% of the total SA content.
T214 115-189 Sentence denotes The C4-O-acetylated Neu5Ac, Neu4,5Ac2, inhibits the influenza A2 virus HA.
T215 190-327 Sentence denotes De-acetylation reagents such as NaOH or NaIO4 treatment completely hemagglutinate Neu4,5Ac2 by elimination of the C4-O-acetyl group [33].
T216 328-465 Sentence denotes The C4-O-acetyl Neu5Ac species are found in various sources such as equine erythrocyte GM3, starfish A. rubens and fish [34,35,36,37,38].
T217 466-551 Sentence denotes C4-O-acetylated Neu5Ac facilitates the initial attachment of viruses to target cells.
T218 552-721 Sentence denotes Like the influenza C virus, infectious salmon anemia virus (ISAV), a member of the Orthomyxoviridae family, contains HE and HEF proteins to mediate virus entry and exit.
T219 722-875 Sentence denotes C4-O-Ac Neu5Ac is the major receptor determinant of ISAV in receptor binding and destruction [38], while the influenza C virus recognizes C9-O-Ac Neu5Ac.
T220 876-1067 Sentence denotes The acetylesterase RDE of ISAV cleaves C4-O-Ac via 4-SA-O-acetylesterase with a short turnover time, whereas C9-O-Ac Neu5Ac is cleaved by 9-SA-O-acetylesterase with a long turnover time [34].

2_test

Id Subject Object Predicate Lexical cue
32604730-21618128-51943973 323-325 21618128 denotes 33
32604730-31683930-51943974 449-451 31683930 denotes 34
32604730-9090814-51943975 452-454 9090814 denotes 35
32604730-16181722-51943976 455-457 16181722 denotes 36
32604730-24833039-51943977 458-460 24833039 denotes 37
32604730-14990724-51943978 461-463 14990724 denotes 38
32604730-14990724-51943979 816-818 14990724 denotes 38
32604730-31683930-51943980 1063-1065 31683930 denotes 34
T78050 323-325 21618128 denotes 33
T53753 449-451 31683930 denotes 34
T38465 452-454 9090814 denotes 35
T72587 455-457 16181722 denotes 36
T75131 458-460 24833039 denotes 37
T15211 461-463 14990724 denotes 38
T68693 816-818 14990724 denotes 38
T49725 1063-1065 31683930 denotes 34

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 598-604 Phenotype denotes anemia http://purl.obolibrary.org/obo/HP_0001903