PMC:7352545 / 10666-11352
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T59 | 81-84 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T60 | 85-91 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T61 | 127-131 | Body_part | denotes | mRNA | http://purl.org/sig/ont/fma/fma67122 |
| T62 | 181-184 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T63 | 185-192 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T64 | 333-341 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T65 | 358-364 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T66 | 406-417 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T67 | 518-524 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T68 | 552-556 | Body_part | denotes | mRNA | http://purl.org/sig/ont/fma/fma67122 |
| T69 | 583-586 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T70 | 621-624 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T71 | 639-642 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T72 | 653-656 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T4 | 493-497 | Body_part | denotes | tail | http://purl.obolibrary.org/obo/UBERON_0002415 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 426 | 675-678 | Gene | denotes | PDB | Gene:5131 |
| 427 | 0-4 | Species | denotes | CoVs | Tax:11118 |
| 428 | 49-62 | Species | denotes | ssRNA viruses | Tax:439488 |
| 429 | 168-172 | Species | denotes | CoVs | Tax:11118 |
| 430 | 347-357 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 431 | 456-459 | Gene | denotes | a 5 | Gene:28884 |
| 432 | 423-428 | Chemical | denotes | ssRNA | |
| 433 | 157-166 | Disease | denotes | infection | MESH:D007239 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T56 | 157-166 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T57 | 347-355 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T111 | 55-62 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T112 | 202-204 | http://purl.obolibrary.org/obo/CLO_0007074 | denotes | kb |
| T113 | 202-204 | http://purl.obolibrary.org/obo/CLO_0051988 | denotes | kb |
| T114 | 286-291 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T115 | 444-450 | http://purl.obolibrary.org/obo/UBERON_0002415 | denotes | tailed |
| T116 | 456-457 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T117 | 491-492 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T118 | 493-497 | http://purl.obolibrary.org/obo/UBERON_0002415 | denotes | tail |
| T119 | 546-551 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T259 | 333-341 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T260 | 406-417 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T261 | 406-411 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T262 | 412-417 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9 | 303-316 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | transcriptase |
| T10 | 303-316 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | transcriptase |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T89 | 0-167 | Sentence | denotes | CoVs are 60–140 nm in size and are enveloped (+) ssRNA viruses, which feature an RNA genome, directly available to function as mRNA and thus result in rapid infection. |
| T90 | 168-342 | Sentence | denotes | CoVs exhibit RNA genomes of 28–32 kb, comprised of two large overlapping open reading frames (ORFs), which encode the virus replicase (transcriptase) and structural proteins. |
| T91 | 343-418 | Sentence | denotes | The SARS-CoV-2 genome is 29,891 bp in size, which encodes 9860 amino acids. |
| T92 | 419-513 | Sentence | denotes | The ssRNA are capped and tailed with a 5′-capping structure and 3′-poly A tail at the termini. |
| T93 | 514-679 | Sentence | denotes | The genome is the same sense as virus mRNA indicating that the viral RNA is translated through its own (+) RNA to synthesize RNA dependent RNA polymerase (RdRp; PDB: |
| T94 | 680-686 | Sentence | denotes | 6M71). |