PMC:7340597 / 9250-11335 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T27","span":{"begin":21,"end":26},"obj":"Body_part"},{"id":"T28","span":{"begin":239,"end":247},"obj":"Body_part"},{"id":"T29","span":{"begin":260,"end":272},"obj":"Body_part"},{"id":"T30","span":{"begin":374,"end":378},"obj":"Body_part"},{"id":"T31","span":{"begin":555,"end":563},"obj":"Body_part"},{"id":"T32","span":{"begin":622,"end":626},"obj":"Body_part"},{"id":"T33","span":{"begin":807,"end":815},"obj":"Body_part"},{"id":"T34","span":{"begin":816,"end":828},"obj":"Body_part"},{"id":"T35","span":{"begin":896,"end":900},"obj":"Body_part"},{"id":"T36","span":{"begin":1049,"end":1057},"obj":"Body_part"},{"id":"T37","span":{"begin":1058,"end":1070},"obj":"Body_part"},{"id":"T38","span":{"begin":1071,"end":1077},"obj":"Body_part"},{"id":"T39","span":{"begin":1138,"end":1146},"obj":"Body_part"},{"id":"T40","span":{"begin":1215,"end":1219},"obj":"Body_part"},{"id":"T41","span":{"begin":1294,"end":1302},"obj":"Body_part"},{"id":"T42","span":{"begin":1315,"end":1327},"obj":"Body_part"},{"id":"T43","span":{"begin":1403,"end":1407},"obj":"Body_part"},{"id":"T44","span":{"begin":1480,"end":1488},"obj":"Body_part"},{"id":"T45","span":{"begin":1501,"end":1513},"obj":"Body_part"},{"id":"T46","span":{"begin":1540,"end":1548},"obj":"Body_part"},{"id":"T47","span":{"begin":1617,"end":1621},"obj":"Body_part"},{"id":"T48","span":{"begin":1741,"end":1749},"obj":"Body_part"},{"id":"T49","span":{"begin":1762,"end":1774},"obj":"Body_part"},{"id":"T50","span":{"begin":1806,"end":1814},"obj":"Body_part"},{"id":"T51","span":{"begin":1883,"end":1887},"obj":"Body_part"},{"id":"T52","span":{"begin":1992,"end":2000},"obj":"Body_part"}],"attributes":[{"id":"A27","pred":"fma_id","subj":"T27","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A28","pred":"fma_id","subj":"T28","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A29","pred":"fma_id","subj":"T29","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A30","pred":"fma_id","subj":"T30","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A31","pred":"fma_id","subj":"T31","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A32","pred":"fma_id","subj":"T32","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A33","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A34","pred":"fma_id","subj":"T34","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A35","pred":"fma_id","subj":"T35","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A36","pred":"fma_id","subj":"T36","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A39","pred":"fma_id","subj":"T39","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A42","pred":"fma_id","subj":"T42","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A43","pred":"fma_id","subj":"T43","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A44","pred":"fma_id","subj":"T44","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A45","pred":"fma_id","subj":"T45","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A52","pred":"fma_id","subj":"T52","obj":"http://purl.org/sig/ont/fma/fma264783"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T18","span":{"begin":21,"end":26},"obj":"Body_part"},{"id":"T19","span":{"begin":319,"end":326},"obj":"Body_part"},{"id":"T20","span":{"begin":1071,"end":1077},"obj":"Body_part"},{"id":"T21","span":{"begin":1117,"end":1124},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"uberon_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A19","pred":"uberon_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/UBERON_0000055"},{"id":"A20","pred":"uberon_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A21","pred":"uberon_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/UBERON_0007780"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-PubTator","denotations":[{"id":"263","span":{"begin":328,"end":339},"obj":"Disease"},{"id":"264","span":{"begin":500,"end":534},"obj":"Disease"},{"id":"265","span":{"begin":576,"end":587},"obj":"Disease"},{"id":"266","span":{"begin":669,"end":677},"obj":"Disease"},{"id":"267","span":{"begin":850,"end":861},"obj":"Disease"},{"id":"268","span":{"begin":1169,"end":1180},"obj":"Disease"},{"id":"269","span":{"begin":1357,"end":1368},"obj":"Disease"},{"id":"270","span":{"begin":1571,"end":1582},"obj":"Disease"},{"id":"271","span":{"begin":1837,"end":1848},"obj":"Disease"},{"id":"276","span":{"begin":1969,"end":1978},"obj":"Disease"},{"id":"277","span":{"begin":1992,"end":2007},"obj":"Disease"},{"id":"278","span":{"begin":2052,"end":2061},"obj":"Disease"},{"id":"279","span":{"begin":2066,"end":2084},"obj":"Disease"}],"attributes":[{"id":"A263","pred":"tao:has_database_id","subj":"263","obj":"MESH:D006965"},{"id":"A264","pred":"tao:has_database_id","subj":"264","obj":"MESH:D005355"},{"id":"A265","pred":"tao:has_database_id","subj":"265","obj":"MESH:D006965"},{"id":"A266","pred":"tao:has_database_id","subj":"266","obj":"MESH:D005355"},{"id":"A267","pred":"tao:has_database_id","subj":"267","obj":"MESH:D006965"},{"id":"A268","pred":"tao:has_database_id","subj":"268","obj":"MESH:D006965"},{"id":"A269","pred":"tao:has_database_id","subj":"269","obj":"MESH:D006965"},{"id":"A270","pred":"tao:has_database_id","subj":"270","obj":"MESH:D006965"},{"id":"A271","pred":"tao:has_database_id","subj":"271","obj":"MESH:D006965"},{"id":"A276","pred":"tao:has_database_id","subj":"276","obj":"MESH:D011014"},{"id":"A277","pred":"tao:has_database_id","subj":"277","obj":"MESH:D055370"},{"id":"A278","pred":"tao:has_database_id","subj":"278","obj":"MESH:D011014"},{"id":"A279","pred":"tao:has_database_id","subj":"279","obj":"MESH:D011655"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T98","span":{"begin":328,"end":339},"obj":"Disease"},{"id":"T99","span":{"begin":421,"end":423},"obj":"Disease"},{"id":"T100","span":{"begin":470,"end":484},"obj":"Disease"},{"id":"T101","span":{"begin":576,"end":587},"obj":"Disease"},{"id":"T102","span":{"begin":716,"end":730},"obj":"Disease"},{"id":"T103","span":{"begin":850,"end":861},"obj":"Disease"},{"id":"T104","span":{"begin":997,"end":1011},"obj":"Disease"},{"id":"T105","span":{"begin":1169,"end":1180},"obj":"Disease"},{"id":"T106","span":{"begin":1357,"end":1368},"obj":"Disease"},{"id":"T107","span":{"begin":1450,"end":1452},"obj":"Disease"},{"id":"T108","span":{"begin":1571,"end":1582},"obj":"Disease"},{"id":"T109","span":{"begin":1664,"end":1666},"obj":"Disease"},{"id":"T110","span":{"begin":1703,"end":1717},"obj":"Disease"},{"id":"T111","span":{"begin":1837,"end":1848},"obj":"Disease"},{"id":"T112","span":{"begin":1930,"end":1932},"obj":"Disease"},{"id":"T113","span":{"begin":1958,"end":1978},"obj":"Disease"},{"id":"T115","span":{"begin":1969,"end":1978},"obj":"Disease"},{"id":"T116","span":{"begin":2038,"end":2040},"obj":"Disease"},{"id":"T117","span":{"begin":2041,"end":2061},"obj":"Disease"},{"id":"T119","span":{"begin":2052,"end":2061},"obj":"Disease"},{"id":"T120","span":{"begin":2066,"end":2084},"obj":"Disease"}],"attributes":[{"id":"A98","pred":"mondo_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"id":"A99","pred":"mondo_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A100","pred":"mondo_id","subj":"T100","obj":"http://purl.obolibrary.org/obo/MONDO_0004822"},{"id":"A101","pred":"mondo_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"id":"A102","pred":"mondo_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/MONDO_0004822"},{"id":"A103","pred":"mondo_id","subj":"T103","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"id":"A104","pred":"mondo_id","subj":"T104","obj":"http://purl.obolibrary.org/obo/MONDO_0004822"},{"id":"A105","pred":"mondo_id","subj":"T105","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"id":"A106","pred":"mondo_id","subj":"T106","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"id":"A107","pred":"mondo_id","subj":"T107","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A108","pred":"mondo_id","subj":"T108","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"id":"A109","pred":"mondo_id","subj":"T109","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A110","pred":"mondo_id","subj":"T110","obj":"http://purl.obolibrary.org/obo/MONDO_0004822"},{"id":"A111","pred":"mondo_id","subj":"T111","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"id":"A112","pred":"mondo_id","subj":"T112","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A113","pred":"mondo_id","subj":"T113","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A114","pred":"mondo_id","subj":"T113","obj":"http://purl.obolibrary.org/obo/MONDO_0056821"},{"id":"A115","pred":"mondo_id","subj":"T115","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A116","pred":"mondo_id","subj":"T116","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A117","pred":"mondo_id","subj":"T117","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A118","pred":"mondo_id","subj":"T117","obj":"http://purl.obolibrary.org/obo/MONDO_0056821"},{"id":"A119","pred":"mondo_id","subj":"T119","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A120","pred":"mondo_id","subj":"T120","obj":"http://purl.obolibrary.org/obo/MONDO_0005279"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T64","span":{"begin":21,"end":26},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T65","span":{"begin":260,"end":272},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T66","span":{"begin":319,"end":326},"obj":"http://purl.obolibrary.org/obo/UBERON_0000055"},{"id":"T67","span":{"begin":374,"end":378},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T68","span":{"begin":622,"end":626},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T69","span":{"begin":781,"end":790},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T70","span":{"begin":816,"end":828},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T71","span":{"begin":896,"end":900},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T72","span":{"begin":1058,"end":1070},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T73","span":{"begin":1084,"end":1085},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T74","span":{"begin":1215,"end":1219},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T75","span":{"begin":1315,"end":1327},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T76","span":{"begin":1403,"end":1407},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T77","span":{"begin":1501,"end":1513},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T78","span":{"begin":1617,"end":1621},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T79","span":{"begin":1762,"end":1774},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T80","span":{"begin":1783,"end":1785},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T81","span":{"begin":1883,"end":1887},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T82","span":{"begin":1958,"end":1968},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T83","span":{"begin":2041,"end":2051},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T64","span":{"begin":230,"end":232},"obj":"Chemical"},{"id":"T67","span":{"begin":513,"end":515},"obj":"Chemical"},{"id":"T70","span":{"begin":745,"end":747},"obj":"Chemical"},{"id":"T73","span":{"begin":1040,"end":1042},"obj":"Chemical"},{"id":"T76","span":{"begin":1732,"end":1734},"obj":"Chemical"},{"id":"T79","span":{"begin":2063,"end":2065},"obj":"Chemical"}],"attributes":[{"id":"A64","pred":"chebi_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/CHEBI_16038"},{"id":"A65","pred":"chebi_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/CHEBI_17553"},{"id":"A66","pred":"chebi_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/CHEBI_74762"},{"id":"A67","pred":"chebi_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/CHEBI_16038"},{"id":"A68","pred":"chebi_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/CHEBI_17553"},{"id":"A69","pred":"chebi_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/CHEBI_74762"},{"id":"A70","pred":"chebi_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/CHEBI_16038"},{"id":"A71","pred":"chebi_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/CHEBI_17553"},{"id":"A72","pred":"chebi_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/CHEBI_74762"},{"id":"A73","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_16038"},{"id":"A74","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_17553"},{"id":"A75","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_74762"},{"id":"A76","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_16038"},{"id":"A77","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_17553"},{"id":"A78","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_74762"},{"id":"A79","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_16038"},{"id":"A80","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_17553"},{"id":"A81","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_74762"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T19","span":{"begin":470,"end":484},"obj":"Phenotype"},{"id":"T20","span":{"begin":716,"end":730},"obj":"Phenotype"},{"id":"T21","span":{"begin":997,"end":1011},"obj":"Phenotype"},{"id":"T22","span":{"begin":1703,"end":1717},"obj":"Phenotype"},{"id":"T23","span":{"begin":1969,"end":1978},"obj":"Phenotype"},{"id":"T24","span":{"begin":1984,"end":2007},"obj":"Phenotype"},{"id":"T25","span":{"begin":2052,"end":2061},"obj":"Phenotype"},{"id":"T26","span":{"begin":2066,"end":2084},"obj":"Phenotype"}],"attributes":[{"id":"A19","pred":"hp_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/HP_0002110"},{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0002110"},{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0002110"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0002110"},{"id":"A23","pred":"hp_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A24","pred":"hp_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/HP_0033006"},{"id":"A25","pred":"hp_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A26","pred":"hp_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/HP_0002204"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-sentences","denotations":[{"id":"T81","span":{"begin":0,"end":61},"obj":"Sentence"},{"id":"T82","span":{"begin":62,"end":132},"obj":"Sentence"},{"id":"T83","span":{"begin":133,"end":423},"obj":"Sentence"},{"id":"T84","span":{"begin":424,"end":677},"obj":"Sentence"},{"id":"T85","span":{"begin":678,"end":946},"obj":"Sentence"},{"id":"T86","span":{"begin":947,"end":1266},"obj":"Sentence"},{"id":"T87","span":{"begin":1267,"end":1452},"obj":"Sentence"},{"id":"T88","span":{"begin":1453,"end":1666},"obj":"Sentence"},{"id":"T89","span":{"begin":1667,"end":1932},"obj":"Sentence"},{"id":"T90","span":{"begin":1933,"end":2085},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T191","span":{"begin":67,"end":68},"obj":"UBERON:0003215"},{"id":"T192","span":{"begin":72,"end":74},"obj":"UBERON:0002048"},{"id":"T194","span":{"begin":129,"end":130},"obj":"UBERON:0001443"},{"id":"T204","span":{"begin":221,"end":222},"obj":"UBERON:0002106"},{"id":"T206","span":{"begin":234,"end":235},"obj":"UBERON:0002113"},{"id":"T208","span":{"begin":240,"end":241},"obj":"UBERON:0002048"},{"id":"T218","span":{"begin":260,"end":272},"obj":"CL:0000057"},{"id":"T227","span":{"begin":302,"end":309},"obj":"UBERON:0010210"},{"id":"T228","span":{"begin":319,"end":325},"obj":"UBERON:0000055"},{"id":"T230","span":{"begin":332,"end":333},"obj":"SP_7"},{"id":"T238","span":{"begin":348,"end":350},"obj":"CL:0000775"},{"id":"T240","span":{"begin":355,"end":356},"obj":"UBERON:0003215"},{"id":"T248","span":{"begin":361,"end":362},"obj":"NCBITaxon:10239"},{"id":"T249","span":{"begin":364,"end":367},"obj":"GO:0005634;CL:0000647"},{"id":"T250","span":{"begin":368,"end":378},"obj":"CL:0000647"},{"id":"T251","span":{"begin":380,"end":392},"obj":"GO:0005634"},{"id":"T252","span":{"begin":393,"end":409},"obj":"GO:0016234"},{"id":"T254","span":{"begin":411,"end":412},"obj":"UBERON:0002048"},{"id":"T255","span":{"begin":412,"end":413},"obj":"UBERON:0003215"},{"id":"T257","span":{"begin":417,"end":418},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T260","span":{"begin":422,"end":425},"obj":"CL:0000775"},{"id":"T264","span":{"begin":439,"end":441},"obj":"UBERON:0003215"},{"id":"T270","span":{"begin":450,"end":452},"obj":"NCBITaxon:10239"},{"id":"T272","span":{"begin":453,"end":456},"obj":"CL:0000647"},{"id":"T274","span":{"begin":456,"end":459},"obj":"GO:0016234"},{"id":"T276","span":{"begin":475,"end":478},"obj":"UBERON:0001443"},{"id":"T277","span":{"begin":502,"end":504},"obj":"UBERON:3010752"},{"id":"T279","span":{"begin":522,"end":525},"obj":"CHEBI:8378;CHEBI:8378"},{"id":"T282","span":{"begin":529,"end":530},"obj":"UBERON:0002167"},{"id":"T284","span":{"begin":565,"end":566},"obj":"CHEBI:24261;CHEBI:24261"},{"id":"T286","span":{"begin":585,"end":586},"obj":"CHEBI:8378;CHEBI:8378"},{"id":"T287","span":{"begin":591,"end":592},"obj":"UBERON:0000033"},{"id":"T289","span":{"begin":602,"end":604},"obj":"UBERON:0001016"},{"id":"T290","span":{"begin":608,"end":610},"obj":"UBERON:0001893"},{"id":"T291","span":{"begin":613,"end":615},"obj":"UBERON:0000033"},{"id":"T292","span":{"begin":624,"end":627},"obj":"UBERON:0002048"},{"id":"T293","span":{"begin":628,"end":629},"obj":"UBERON:0000479"},{"id":"T294","span":{"begin":633,"end":634},"obj":"UBERON:0002048"},{"id":"T298","span":{"begin":651,"end":654},"obj":"UBERON:0001981"},{"id":"T307","span":{"begin":745,"end":747},"obj":"CHEBI:8378;CHEBI:8378"},{"id":"T308","span":{"begin":749,"end":752},"obj":"CHEBI:8378;CHEBI:8378"},{"id":"T310","span":{"begin":759,"end":760},"obj":"UBERON:0001004"},{"id":"T313","span":{"begin":774,"end":775},"obj":"UBERON:0001004"},{"id":"T318","span":{"begin":788,"end":790},"obj":"CL:0000542"},{"id":"T319","span":{"begin":807,"end":815},"obj":"UBERON:0003215"},{"id":"T320","span":{"begin":816,"end":828},"obj":"CL:0000057"},{"id":"T321","span":{"begin":829,"end":833},"obj":"UBERON:0010148"},{"id":"T322","span":{"begin":1262,"end":1327},"obj":"UBERON:0004894"},{"id":"T323","span":{"begin":1348,"end":1355},"obj":"UBERON:0010210"},{"id":"T324","span":{"begin":1432,"end":1459},"obj":"NCBITaxon:4751"},{"id":"T325","span":{"begin":1806,"end":1814},"obj":"UBERON:0003215"},{"id":"T183","span":{"begin":53,"end":62},"obj":"UBERON:0002048"},{"id":"T5690","span":{"begin":137,"end":147},"obj":"UBERON:0001004"},{"id":"T89823","span":{"begin":167,"end":178},"obj":"UBERON:0002299"},{"id":"T6849","span":{"begin":179,"end":194},"obj":"UBERON:0002299"},{"id":"T71154","span":{"begin":202,"end":210},"obj":"SP_7"},{"id":"T14667","span":{"begin":222,"end":231},"obj":"UBERON:0002048"},{"id":"T66720","span":{"begin":260,"end":266},"obj":"UBERON:0002113"},{"id":"T11317","span":{"begin":338,"end":347},"obj":"UBERON:0002048"},{"id":"T28427","span":{"begin":485,"end":493},"obj":"UBERON:0003215"},{"id":"T80397","span":{"begin":559,"end":568},"obj":"UBERON:0002048"},{"id":"T193","span":{"begin":1066,"end":1071},"obj":"UBERON:0001443"},{"id":"T73310","span":{"begin":1130,"end":1135},"obj":"UBERON:0001443"},{"id":"T195","span":{"begin":1206,"end":1216},"obj":"UBERON:0003893"},{"id":"T196","span":{"begin":1266,"end":1270},"obj":"UBERON:0004096"},{"id":"T197","span":{"begin":1335,"end":1340},"obj":"UBERON:0000170"},{"id":"T198","span":{"begin":1910,"end":1915},"obj":"UBERON:0001443"},{"id":"T199","span":{"begin":1974,"end":1979},"obj":"UBERON:0001443"},{"id":"T200","span":{"begin":2047,"end":2057},"obj":"UBERON:0003893"}],"text":"Table 2 Radiological Chest CT scan and histological findings.\nCase Radiological findings Histological findings description Diagnosis\n1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis\n3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD\n4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP\n5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\n7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP\nAFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism."}