PMC:7340597 / 9250-11335
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T27 | 21-26 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T28 | 239-247 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T29 | 260-272 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T30 | 374-378 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T31 | 555-563 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T32 | 622-626 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T33 | 807-815 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T34 | 816-828 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T35 | 896-900 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T36 | 1049-1057 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T37 | 1058-1070 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T38 | 1071-1077 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T39 | 1138-1146 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T40 | 1215-1219 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T41 | 1294-1302 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T42 | 1315-1327 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T43 | 1403-1407 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T44 | 1480-1488 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T45 | 1501-1513 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T46 | 1540-1548 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T47 | 1617-1621 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T48 | 1741-1749 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T49 | 1762-1774 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T50 | 1806-1814 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T51 | 1883-1887 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T52 | 1992-2000 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T18 | 21-26 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T19 | 319-326 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T20 | 1071-1077 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T21 | 1117-1124 | Body_part | denotes | exudate | http://purl.obolibrary.org/obo/UBERON_0007780 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 263 | 328-339 | Disease | denotes | hyperplasia | MESH:D006965 |
| 264 | 500-534 | Disease | denotes | subsegmental PE Extensive fibrosis | MESH:D005355 |
| 265 | 576-587 | Disease | denotes | hyperplasia | MESH:D006965 |
| 266 | 669-677 | Disease | denotes | Fibrosis | MESH:D005355 |
| 267 | 850-861 | Disease | denotes | hyperplasia | MESH:D006965 |
| 268 | 1169-1180 | Disease | denotes | hyperplasia | MESH:D006965 |
| 269 | 1357-1368 | Disease | denotes | hyperplasia | MESH:D006965 |
| 270 | 1571-1582 | Disease | denotes | hyperplasia | MESH:D006965 |
| 271 | 1837-1848 | Disease | denotes | hyperplasia | MESH:D006965 |
| 276 | 1969-1978 | Disease | denotes | pneumonia | MESH:D011014 |
| 277 | 1992-2007 | Disease | denotes | alveolar damage | MESH:D055370 |
| 278 | 2052-2061 | Disease | denotes | pneumonia | MESH:D011014 |
| 279 | 2066-2084 | Disease | denotes | pulmonary embolism | MESH:D011655 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T98 | 328-339 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T99 | 421-423 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T100 | 470-484 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T101 | 576-587 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T102 | 716-730 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T103 | 850-861 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T104 | 997-1011 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T105 | 1169-1180 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T106 | 1357-1368 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T107 | 1450-1452 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T108 | 1571-1582 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T109 | 1664-1666 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T110 | 1703-1717 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T111 | 1837-1848 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T112 | 1930-1932 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T113 | 1958-1978 | Disease | denotes | organizing pneumonia | http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821 |
| T115 | 1969-1978 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T116 | 2038-2040 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T117 | 2041-2061 | Disease | denotes | organizing pneumonia | http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821 |
| T119 | 2052-2061 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T120 | 2066-2084 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T64 | 21-26 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T65 | 260-272 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T66 | 319-326 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
| T67 | 374-378 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T68 | 622-626 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T69 | 781-790 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membranes |
| T70 | 816-828 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T71 | 896-900 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T72 | 1058-1070 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T73 | 1084-1085 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T74 | 1215-1219 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T75 | 1315-1327 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T76 | 1403-1407 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T77 | 1501-1513 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T78 | 1617-1621 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T79 | 1762-1774 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T80 | 1783-1785 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T81 | 1883-1887 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T82 | 1958-1968 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizing |
| T83 | 2041-2051 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizing |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T64 | 230-232 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T67 | 513-515 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T70 | 745-747 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T73 | 1040-1042 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T76 | 1732-1734 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T79 | 2063-2065 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T19 | 470-484 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
| T20 | 716-730 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
| T21 | 997-1011 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
| T22 | 1703-1717 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
| T23 | 1969-1978 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T24 | 1984-2007 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
| T25 | 2052-2061 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T26 | 2066-2084 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T81 | 0-61 | Sentence | denotes | Table 2 Radiological Chest CT scan and histological findings. |
| T82 | 62-132 | Sentence | denotes | Case Radiological findings Histological findings description Diagnosis |
| T83 | 133-423 | Sentence | denotes | 1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
| T84 | 424-677 | Sentence | denotes | 2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis |
| T85 | 678-946 | Sentence | denotes | 3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD |
| T86 | 947-1266 | Sentence | denotes | 4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP |
| T87 | 1267-1452 | Sentence | denotes | 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
| T88 | 1453-1666 | Sentence | denotes | 6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
| T89 | 1667-1932 | Sentence | denotes | 7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
| T90 | 1933-2085 | Sentence | denotes | AFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T191 | 67-68 | UBERON:0003215 | denotes | R |
| T192 | 72-74 | UBERON:0002048 | denotes | lo |
| T194 | 129-130 | UBERON:0001443 | denotes | s |
| T204 | 221-222 | UBERON:0002106 | denotes | e |
| T206 | 234-235 | UBERON:0002113 | denotes | n |
| T208 | 240-241 | UBERON:0002048 | denotes | l |
| T218 | 260-272 | CL:0000057 | denotes | fibroblastic |
| T227 | 302-309 | UBERON:0010210 | denotes | thrombi |
| T228 | 319-325 | UBERON:0000055 | denotes | vessel |
| T230 | 332-333 | SP_7 | denotes | r |
| T238 | 348-350 | CL:0000775 | denotes | pi |
| T240 | 355-356 | UBERON:0003215 | denotes | l |
| T248 | 361-362 | NCBITaxon:10239 | denotes | l |
| T249 | 364-367 | GO:0005634;CL:0000647 | denotes | ted |
| T250 | 368-378 | CL:0000647 | denotes | giant cell |
| T251 | 380-392 | GO:0005634 | denotes | intranuclear |
| T252 | 393-409 | GO:0016234 | denotes | inclusion bodies |
| T254 | 411-412 | UBERON:0002048 | denotes | n |
| T255 | 412-413 | UBERON:0003215 | denotes | o |
| T257 | 417-418 | CHEBI:51686;CHEBI:51686 | denotes | h |
| T260 | 422-425 | CL:0000775 | denotes | P 2 |
| T264 | 439-441 | UBERON:0003215 | denotes | vi |
| T270 | 450-452 | NCBITaxon:10239 | denotes | vi |
| T272 | 453-456 | CL:0000647 | denotes | g c |
| T274 | 456-459 | GO:0016234 | denotes | ons |
| T276 | 475-478 | UBERON:0001443 | denotes | hie |
| T277 | 502-504 | UBERON:3010752 | denotes | bs |
| T279 | 522-525 | CHEBI:8378;CHEBI:8378 | denotes | ive |
| T282 | 529-530 | UBERON:0002167 | denotes | r |
| T284 | 565-566 | CHEBI:24261;CHEBI:24261 | denotes | t |
| T286 | 585-586 | CHEBI:8378;CHEBI:8378 | denotes | i |
| T287 | 591-592 | UBERON:0000033 | denotes | h |
| T289 | 602-604 | UBERON:0001016 | denotes | ul |
| T290 | 608-610 | UBERON:0001893 | denotes | cl |
| T291 | 613-615 | UBERON:0000033 | denotes | ed |
| T292 | 624-627 | UBERON:0002048 | denotes | ll, |
| T293 | 628-629 | UBERON:0000479 | denotes | i |
| T294 | 633-634 | UBERON:0002048 | denotes | n |
| T298 | 651-654 | UBERON:0001981 | denotes | bod |
| T307 | 745-747 | CHEBI:8378;CHEBI:8378 | denotes | PE |
| T308 | 749-752 | CHEBI:8378;CHEBI:8378 | denotes | nfl |
| T310 | 759-760 | UBERON:0001004 | denotes | y |
| T313 | 774-775 | UBERON:0001004 | denotes | y |
| T318 | 788-790 | CL:0000542 | denotes | es |
| T319 | 807-815 | UBERON:0003215 | denotes | alveolar |
| T320 | 816-828 | CL:0000057 | denotes | fibroblastic |
| T321 | 829-833 | UBERON:0010148 | denotes | plug |
| T322 | 1262-1327 | UBERON:0004894 | denotes | AFOP 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic |
| T323 | 1348-1355 | UBERON:0010210 | denotes | thrombi |
| T324 | 1432-1459 | NCBITaxon:4751 | denotes | bodies, no hyphae OP 6 GGO, |
| T325 | 1806-1814 | UBERON:0003215 | denotes | alveolar |
| T183 | 53-62 | UBERON:0002048 | denotes | indings. |
| T5690 | 137-147 | UBERON:0001004 | denotes | O, crazy p |
| T89823 | 167-178 | UBERON:0002299 | denotes | consolidat |
| T6849 | 179-194 | UBERON:0002299 | denotes | on, subpleural |
| T71154 | 202-210 | SP_7 | denotes | segment |
| T14667 | 222-231 | UBERON:0002048 | denotes | gmental P |
| T66720 | 260-266 | UBERON:0002113 | denotes | fibrob |
| T11317 | 338-347 | UBERON:0002048 | denotes | a with at |
| T28427 | 485-493 | UBERON:0003215 | denotes | segment |
| T80397 | 559-568 | UBERON:0002048 | denotes | olar stru |
| T193 | 1066-1071 | UBERON:0001443 | denotes | stic |
| T73310 | 1130-1135 | UBERON:0001443 | denotes | ning |
| T195 | 1206-1216 | UBERON:0003893 | denotes | ed giant c |
| T196 | 1266-1270 | UBERON:0004096 | denotes | 5 G |
| T197 | 1335-1340 | UBERON:0000170 | denotes | (32%) |
| T198 | 1910-1915 | UBERON:0001443 | denotes | n bod |
| T199 | 1974-1979 | UBERON:0001443 | denotes | onia, |
| T200 | 2047-2057 | UBERON:0003893 | denotes | zing pneum |