PMC:7340597 / 27128-27941
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T147 | 29-33 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T88 | 29-33 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 637 | 151-159 | Species | denotes | patients | Tax:9606 |
| 638 | 207-215 | Species | denotes | patients | Tax:9606 |
| 639 | 452-460 | Species | denotes | patients | Tax:9606 |
| 640 | 785-792 | Chemical | denotes | steroid | MESH:D013256 |
| 641 | 66-88 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 642 | 111-143 | Disease | denotes | invasive pulmonary aspergillosis | MESH:D055744 |
| 643 | 250-272 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 644 | 329-335 | Disease | denotes | deaths | MESH:D003643 |
| 645 | 396-408 | Disease | denotes | septic shock | MESH:D012772 |
| 646 | 421-434 | Disease | denotes | aspergillosis | MESH:D001228 |
| 647 | 589-624 | Disease | denotes | respiratory conditions deteriorated | MESH:D012131 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T246 | 66-88 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T247 | 75-88 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T248 | 130-143 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T249 | 174-178 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T250 | 231-235 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T251 | 250-272 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T252 | 259-272 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T253 | 343-347 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T254 | 421-434 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T255 | 680-684 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T246 | 29-33 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T247 | 29-33 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T127 | 285-295 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
| T128 | 470-480 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
| T129 | 728-738 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
| T130 | 785-792 | Chemical | denotes | steroid | http://purl.obolibrary.org/obo/CHEBI_35341 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T68 | 111-143 | Phenotype | denotes | invasive pulmonary aspergillosis | http://purl.obolibrary.org/obo/HP_0020103 |
| T69 | 403-408 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T222 | 0-89 | Sentence | denotes | To our surprise, none of the lung biopsies showed any presence of invasive aspergillosis. |
| T223 | 90-304 | Sentence | denotes | Lack of evidence for invasive pulmonary aspergillosis in our patients with probable CAPA raises the question whether patients with suspected CAPA truly develop invasive aspergillosis and require antifungal therapy. |
| T224 | 305-435 | Sentence | denotes | For instance, the three deaths in the CAPA report from France were attributed to bacterial septic shock, and not to aspergillosis. |
| T225 | 436-643 | Sentence | denotes | Although in our patients adequate antifungal treatment could be an explanation for the absence of histologic fungal features, we find this improbable as respiratory conditions deteriorated despite treatment. |
| T226 | 644-813 | Sentence | denotes | Further research on the presence of CAPA, its case definition and the necessity for antifungal treatment and (relative) contraindication for steroid treatment is needed. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T422 | 29-33 | UBERON:0002048 | denotes | lung |
| T423 | 120-129 | UBERON:0002048 | denotes | pulmonary |
| T424 | 329-335 | GO:0016265 | denotes | deaths |
| T425 | 386-395 | NCBITaxon:2 | denotes | bacterial |
| T426 | 589-600 | UBERON:0001004 | denotes | respiratory |
| T427 | 785-792 | CHEBI:35341;CHEBI:35341 | denotes | steroid |
| T45354 | 29-33 | UBERON:0002048 | denotes | lung |
| T56788 | 120-129 | UBERON:0002048 | denotes | pulmonary |
| T54417 | 329-335 | GO:0016265 | denotes | deaths |
| T81328 | 386-395 | NCBITaxon:2 | denotes | bacterial |
| T86074 | 589-600 | UBERON:0001004 | denotes | respiratory |
| T651 | 785-792 | CHEBI:35341;CHEBI:35341 | denotes | steroid |