PMC:7321036 / 71-1121 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7321036","sourcedb":"PMC","sourceid":"7321036","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7321036","text":"The causative agent of the coronavirus disease 2019 (COVID-19) pandemic, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has infected millions and killed hundreds of thousands of people worldwide, highlighting an urgent need to develop antiviral therapies. Here we present a quantitative mass spectrometry-based phosphoproteomics survey of SARS-CoV-2 infection in Vero E6 cells, revealing dramatic rewiring of phosphorylation on host and viral proteins. SARS-CoV-2 infection promoted casein kinase II (CK2) and p38 MAPK activation, production of diverse cytokines, and shutdown of mitotic kinases, resulting in cell cycle arrest. Infection also stimulated a marked induction of CK2-containing filopodial protrusions possessing budding viral particles. Eighty-seven drugs and compounds were identified by mapping global phosphorylation profiles to dysregulated kinases and pathways. We found pharmacologic inhibition of the p38, CK2, CDK, AXL, and PIKFYVE kinases to possess antiviral efficacy, representing potential COVID-19 therapies.","tracks":[{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T2","span":{"begin":27,"end":38},"obj":"NCBITaxon:11118"},{"id":"T3","span":{"begin":53,"end":61},"obj":"SP_7"},{"id":"T4","span":{"begin":73,"end":85},"obj":"SP_7"},{"id":"T5","span":{"begin":86,"end":97},"obj":"SP_7;UBERON:0001004"},{"id":"T6","span":{"begin":98,"end":120},"obj":"SP_7"},{"id":"T7","span":{"begin":122,"end":132},"obj":"SP_7"},{"id":"T8","span":{"begin":193,"end":199},"obj":"NCBITaxon:9606"},{"id":"T9","span":{"begin":354,"end":364},"obj":"SP_7"},{"id":"T10","span":{"begin":378,"end":382},"obj":"CL_6"},{"id":"T11","span":{"begin":452,"end":457},"obj":"NCBITaxon:10239"},{"id":"T12","span":{"begin":468,"end":478},"obj":"SP_7"},{"id":"T13","span":{"begin":525,"end":528},"obj":"PR:000008220;GO:0000187"},{"id":"T14","span":{"begin":529,"end":533},"obj":"GO:0000187;PR:000000103"},{"id":"T15","span":{"begin":534,"end":544},"obj":"GO:0000187"},{"id":"T16","span":{"begin":595,"end":602},"obj":"GO:0007067"},{"id":"T17","span":{"begin":625,"end":635},"obj":"GO:0007050"},{"id":"T18","span":{"begin":749,"end":754},"obj":"NCBITaxon:10239"},{"id":"T19","span":{"begin":779,"end":784},"obj":"CHEBI:23888;CHEBI:23888"},{"id":"T20","span":{"begin":789,"end":798},"obj":"CHEBI:36357;CHEBI:36357"},{"id":"T21","span":{"begin":861,"end":873},"obj":"GO:0065007"},{"id":"T22","span":{"begin":905,"end":918},"obj":"CHEBI:52217;CHEBI:52217"},{"id":"T23","span":{"begin":937,"end":940},"obj":"PR:000008220"},{"id":"T24","span":{"begin":1031,"end":1039},"obj":"SP_7"},{"id":"T50663","span":{"begin":27,"end":38},"obj":"NCBITaxon:11118"},{"id":"T75055","span":{"begin":53,"end":61},"obj":"SP_7"},{"id":"T31809","span":{"begin":73,"end":85},"obj":"SP_7"},{"id":"T78021","span":{"begin":86,"end":97},"obj":"SP_7;UBERON:0001004"},{"id":"T59836","span":{"begin":98,"end":120},"obj":"SP_7"},{"id":"T17117","span":{"begin":122,"end":132},"obj":"SP_7"},{"id":"T85062","span":{"begin":193,"end":199},"obj":"NCBITaxon:9606"},{"id":"T78173","span":{"begin":354,"end":364},"obj":"SP_7"},{"id":"T61255","span":{"begin":378,"end":382},"obj":"CL_6"},{"id":"T10677","span":{"begin":452,"end":457},"obj":"NCBITaxon:10239"},{"id":"T47649","span":{"begin":468,"end":478},"obj":"SP_7"},{"id":"T16084","span":{"begin":525,"end":528},"obj":"PR:000008220;GO:0000187"},{"id":"T58882","span":{"begin":529,"end":533},"obj":"GO:0000187;PR:000000103"},{"id":"T51337","span":{"begin":534,"end":544},"obj":"GO:0000187"},{"id":"T21669","span":{"begin":595,"end":602},"obj":"GO:0007067"},{"id":"T31315","span":{"begin":625,"end":635},"obj":"GO:0007050"},{"id":"T97490","span":{"begin":749,"end":754},"obj":"NCBITaxon:10239"},{"id":"T33194","span":{"begin":779,"end":784},"obj":"CHEBI:23888;CHEBI:23888"},{"id":"T59691","span":{"begin":789,"end":798},"obj":"CHEBI:36357;CHEBI:36357"},{"id":"T77793","span":{"begin":861,"end":873},"obj":"GO:0065007"},{"id":"T44088","span":{"begin":905,"end":918},"obj":"CHEBI:52217;CHEBI:52217"},{"id":"T2452","span":{"begin":937,"end":940},"obj":"PR:000008220"},{"id":"T31032","span":{"begin":1031,"end":1039},"obj":"SP_7"}],"attributes":[{"subj":"T2","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T3","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T4","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T5","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T6","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T7","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T8","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T9","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T10","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T11","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T12","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T13","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T14","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T15","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T16","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T17","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T18","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T19","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T20","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T21","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T22","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T23","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T24","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T50663","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T75055","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T31809","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T78021","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T59836","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T17117","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T85062","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T78173","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T61255","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T10677","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T47649","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T16084","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T58882","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T51337","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T21669","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T31315","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T97490","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T33194","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T59691","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T77793","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T44088","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T2452","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T31032","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T68056","span":{"begin":386,"end":391},"obj":"Body_part"},{"id":"T14003","span":{"begin":458,"end":466},"obj":"Body_part"},{"id":"T64412","span":{"begin":568,"end":577},"obj":"Body_part"},{"id":"T62262","span":{"begin":625,"end":629},"obj":"Body_part"}],"attributes":[{"id":"A71193","pred":"fma_id","subj":"T68056","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A30638","pred":"fma_id","subj":"T14003","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A11210","pred":"fma_id","subj":"T64412","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A55483","pred":"fma_id","subj":"T62262","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T68056","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T14003","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T64412","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T62262","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T3","span":{"begin":27,"end":51},"obj":"Disease"},{"id":"T4","span":{"begin":53,"end":61},"obj":"Disease"},{"id":"T5","span":{"begin":73,"end":120},"obj":"Disease"},{"id":"T6","span":{"begin":73,"end":106},"obj":"Disease"},{"id":"T7","span":{"begin":122,"end":130},"obj":"Disease"},{"id":"T8","span":{"begin":354,"end":362},"obj":"Disease"},{"id":"T9","span":{"begin":365,"end":374},"obj":"Disease"},{"id":"T10","span":{"begin":468,"end":476},"obj":"Disease"},{"id":"T11","span":{"begin":479,"end":488},"obj":"Disease"},{"id":"T12","span":{"begin":644,"end":653},"obj":"Disease"},{"id":"T13","span":{"begin":1031,"end":1039},"obj":"Disease"}],"attributes":[{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T31254","span":{"begin":135,"end":138},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T63961","span":{"begin":287,"end":288},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T6044","span":{"begin":378,"end":391},"obj":"http://purl.obolibrary.org/obo/CLO_0051719"},{"id":"T65872","span":{"begin":534,"end":544},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T17477","span":{"begin":625,"end":629},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T7552","span":{"begin":670,"end":671},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T31254","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T63961","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T6044","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T65872","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17477","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T7552","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":250,"end":259},"obj":"Chemical"},{"id":"T2","span":{"begin":458,"end":466},"obj":"Chemical"},{"id":"T3","span":{"begin":512,"end":514},"obj":"Chemical"},{"id":"T4","span":{"begin":779,"end":784},"obj":"Chemical"},{"id":"T5","span":{"begin":988,"end":997},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_22587"},{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_22587"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T3721","span":{"begin":424,"end":439},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T23088","span":{"begin":529,"end":544},"obj":"http://purl.obolibrary.org/obo/GO_0000187"},{"id":"T80020","span":{"begin":529,"end":533},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T30030","span":{"begin":625,"end":642},"obj":"http://purl.obolibrary.org/obo/GO_0007050"},{"id":"T24122","span":{"begin":625,"end":635},"obj":"http://purl.obolibrary.org/obo/GO_0007049"},{"id":"T79650","span":{"begin":741,"end":748},"obj":"http://purl.obolibrary.org/obo/GO_0007114"},{"id":"T37166","span":{"begin":833,"end":848},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"attributes":[{"subj":"T3721","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T23088","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T80020","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T30030","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T24122","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T79650","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T37166","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"17","span":{"begin":525,"end":533},"obj":"Gene"},{"id":"18","span":{"begin":937,"end":940},"obj":"Gene"},{"id":"19","span":{"begin":952,"end":955},"obj":"Gene"},{"id":"20","span":{"begin":73,"end":120},"obj":"Species"},{"id":"21","span":{"begin":122,"end":132},"obj":"Species"},{"id":"22","span":{"begin":193,"end":199},"obj":"Species"},{"id":"23","span":{"begin":27,"end":51},"obj":"Disease"},{"id":"24","span":{"begin":53,"end":61},"obj":"Disease"},{"id":"25","span":{"begin":139,"end":147},"obj":"Disease"},{"id":"26","span":{"begin":354,"end":374},"obj":"Disease"},{"id":"27","span":{"begin":468,"end":488},"obj":"Disease"},{"id":"28","span":{"begin":636,"end":642},"obj":"Disease"},{"id":"29","span":{"begin":644,"end":653},"obj":"Disease"},{"id":"30","span":{"begin":1031,"end":1039},"obj":"Disease"},{"id":"31","span":{"begin":383,"end":385},"obj":"CellLine"}],"attributes":[{"id":"A17","pred":"tao:has_database_id","subj":"17","obj":"Gene:26416"},{"id":"A18","pred":"tao:has_database_id","subj":"18","obj":"Gene:5594"},{"id":"A19","pred":"tao:has_database_id","subj":"19","obj":"Gene:558"},{"id":"A20","pred":"tao:has_database_id","subj":"20","obj":"Tax:2697049"},{"id":"A21","pred":"tao:has_database_id","subj":"21","obj":"Tax:2697049"},{"id":"A22","pred":"tao:has_database_id","subj":"22","obj":"Tax:9606"},{"id":"A23","pred":"tao:has_database_id","subj":"23","obj":"MESH:C000657245"},{"id":"A24","pred":"tao:has_database_id","subj":"24","obj":"MESH:C000657245"},{"id":"A25","pred":"tao:has_database_id","subj":"25","obj":"MESH:D007239"},{"id":"A26","pred":"tao:has_database_id","subj":"26","obj":"MESH:C000657245"},{"id":"A27","pred":"tao:has_database_id","subj":"27","obj":"MESH:C000657245"},{"id":"A28","pred":"tao:has_database_id","subj":"28","obj":"MESH:D006323"},{"id":"A29","pred":"tao:has_database_id","subj":"29","obj":"MESH:D007239"},{"id":"A30","pred":"tao:has_database_id","subj":"30","obj":"MESH:C000657245"},{"id":"A31","pred":"tao:has_database_id","subj":"31","obj":"CVCL:4582"},{"subj":"17","pred":"source","obj":"LitCovid-PubTator"},{"subj":"18","pred":"source","obj":"LitCovid-PubTator"},{"subj":"19","pred":"source","obj":"LitCovid-PubTator"},{"subj":"20","pred":"source","obj":"LitCovid-PubTator"},{"subj":"21","pred":"source","obj":"LitCovid-PubTator"},{"subj":"22","pred":"source","obj":"LitCovid-PubTator"},{"subj":"23","pred":"source","obj":"LitCovid-PubTator"},{"subj":"24","pred":"source","obj":"LitCovid-PubTator"},{"subj":"25","pred":"source","obj":"LitCovid-PubTator"},{"subj":"26","pred":"source","obj":"LitCovid-PubTator"},{"subj":"27","pred":"source","obj":"LitCovid-PubTator"},{"subj":"28","pred":"source","obj":"LitCovid-PubTator"},{"subj":"29","pred":"source","obj":"LitCovid-PubTator"},{"subj":"30","pred":"source","obj":"LitCovid-PubTator"},{"subj":"31","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T3","span":{"begin":0,"end":270},"obj":"Sentence"},{"id":"T4","span":{"begin":271,"end":467},"obj":"Sentence"},{"id":"T5","span":{"begin":468,"end":643},"obj":"Sentence"},{"id":"T6","span":{"begin":644,"end":765},"obj":"Sentence"},{"id":"T7","span":{"begin":766,"end":895},"obj":"Sentence"},{"id":"T8","span":{"begin":896,"end":1050},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T3","pred":"source","obj":"LitCovid-sentences"},{"subj":"T4","pred":"source","obj":"LitCovid-sentences"},{"subj":"T5","pred":"source","obj":"LitCovid-sentences"},{"subj":"T6","pred":"source","obj":"LitCovid-sentences"},{"subj":"T7","pred":"source","obj":"LitCovid-sentences"},{"subj":"T8","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PMC-OGER-BB","color":"#93ecbd","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#eca393"},{"id":"LitCovid-PD-MONDO","color":"#939dec"},{"id":"LitCovid-PD-CLO","color":"#b7ec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93d1"},{"id":"LitCovid-PD-GO-BP","color":"#93ebec"},{"id":"LitCovid-PubTator","color":"#ecd393"},{"id":"LitCovid-sentences","color":"#b993ec"}]}]}}