PMC:7321036 / 57745-58256
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T433 | 81-85 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T434 | 172-176 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T435 | 384-388 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T436 | 399-404 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T437 | 428-433 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T438 | 500-504 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T19 | 384-388 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T303 | 120-128 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T304 | 131-140 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T305 | 266-274 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T306 | 277-286 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T307 | 351-359 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T753 | 21-22 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T754 | 69-70 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T755 | 75-90 | http://www.ebi.ac.uk/cellline#human_cell_line | denotes | human cell line |
| T756 | 165-171 | http://purl.obolibrary.org/obo/NCBITaxon_9479 | denotes | monkey |
| T757 | 172-181 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell line |
| T758 | 183-187 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T759 | 183-187 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T760 | 212-215 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T761 | 378-383 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T762 | 384-388 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T763 | 384-388 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T764 | 389-393 | http://purl.obolibrary.org/obo/CLO_0001601 | denotes | A549 |
| T765 | 389-393 | http://purl.obolibrary.org/obo/CLO_0050025 | denotes | A549 |
| T766 | 389-393 | http://purl.obolibrary.org/obo/CLO_0054264 | denotes | A549 |
| T767 | 389-393 | http://purl.obolibrary.org/obo/CLO_0054265 | denotes | A549 |
| T768 | 389-393 | http://purl.obolibrary.org/obo/CLO_0054266 | denotes | A549 |
| T769 | 389-393 | http://purl.obolibrary.org/obo/CLO_0054267 | denotes | A549 |
| T770 | 389-393 | http://purl.obolibrary.org/obo/CLO_0054268 | denotes | A549 |
| T771 | 389-393 | http://purl.obolibrary.org/obo/CLO_0054269 | denotes | A549 |
| T772 | 399-404 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T773 | 420-433 | http://purl.obolibrary.org/obo/CLO_0051719 | denotes | Vero E6 cells |
| T774 | 500-510 | http://purl.obolibrary.org/obo/CLO_0000031 | denotes | cell lines |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T51 | 451-455 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1298 | 394-398 | Gene | denotes | ACE2 | Gene:59272 |
| 1299 | 75-80 | Species | denotes | human | Tax:9606 |
| 1300 | 151-171 | Species | denotes | African green monkey | Tax:9534 |
| 1301 | 351-361 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1302 | 378-383 | Species | denotes | human | Tax:9606 |
| 1303 | 120-140 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 1304 | 266-286 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 1305 | 188-190 | CellLine | denotes | E6 | CVCL:4582 |
| 1306 | 389-393 | CellLine | denotes | A549 | CVCL:0023 |
| 1307 | 425-427 | CellLine | denotes | E6 | CVCL:4582 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T372 | 0-20 | Sentence | denotes | Limitations of Study |
| T373 | 21-311 | Sentence | denotes | A limitation of the current study is the use of a non-human cell line for proteomics analysis upon SARS-CoV-2 infection; here, an African green monkey cell line (Vero E6) was used because it has been shown previously to be highly permissible to SARS-CoV-2 infection (Harcourt et al., 2020). |
| T374 | 312-434 | Sentence | denotes | However, pharmacological inhibition of SARS-CoV-2 was assessed in human lung A549-ACE2 cells in addition to Vero E6 cells. |
| T375 | 435-511 | Sentence | denotes | The majority of drug effects were found to be replicated between cell lines. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32645325-32160149-20773098 | 305-309 | 32160149 | denotes | 2020 |