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PMC:7321036 / 32244-33827 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T249 41-49 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257
T250 53-58 Body_part denotes Actin http://purl.org/sig/ont/fma/fma67843
T251 360-365 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T252 445-452 Body_part denotes F-actin http://purl.org/sig/ont/fma/fma67844
T253 459-466 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T254 522-529 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T255 734-739 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T256 815-820 Body_part denotes actin http://purl.org/sig/ont/fma/fma67843
T257 929-934 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T258 1015-1022 Body_part denotes F-actin http://purl.org/sig/ont/fma/fma67844
T259 1026-1033 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T260 1253-1260 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T261 1288-1293 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T262 1328-1335 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T263 1529-1533 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T11 560-563 Body_part denotes tip http://purl.obolibrary.org/obo/UBERON_2001840
T12 828-831 Body_part denotes tip http://purl.obolibrary.org/obo/UBERON_2001840

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T145 104-112 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T146 380-388 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T147 754-762 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T148 949-957 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T149 1497-1505 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T261 72-73 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T262 217-225 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T263 270-278 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T264 281-282 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T265 316-324 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T266 345-346 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T267 353-359 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco-2
T268 353-359 http://purl.obolibrary.org/obo/CLO_0051943 denotes Caco-2
T269 353-359 http://purl.obolibrary.org/obo/CLO_0051958 denotes Caco-2
T270 353-359 http://purl.obolibrary.org/obo/CLO_0051960 denotes Caco-2
T271 360-365 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T272 491-492 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T273 727-733 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco-2
T274 727-733 http://purl.obolibrary.org/obo/CLO_0051943 denotes Caco-2
T275 727-733 http://purl.obolibrary.org/obo/CLO_0051958 denotes Caco-2
T276 727-733 http://purl.obolibrary.org/obo/CLO_0051960 denotes Caco-2
T277 734-739 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T278 888-895 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T279 912-916 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T280 922-928 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco-2
T281 922-928 http://purl.obolibrary.org/obo/CLO_0051943 denotes Caco-2
T282 922-928 http://purl.obolibrary.org/obo/CLO_0051958 denotes Caco-2
T283 922-928 http://purl.obolibrary.org/obo/CLO_0051960 denotes Caco-2
T284 929-934 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T285 1281-1287 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco-2
T286 1281-1287 http://purl.obolibrary.org/obo/CLO_0051943 denotes Caco-2
T287 1281-1287 http://purl.obolibrary.org/obo/CLO_0051958 denotes Caco-2
T288 1281-1287 http://purl.obolibrary.org/obo/CLO_0051960 denotes Caco-2
T289 1288-1293 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T290 1521-1533 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T208 75-82 Chemical denotes Pathway http://purl.obolibrary.org/obo/CHEBI_34922
T209 459-466 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T210 522-529 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T211 872-874 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T212 1026-1033 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T213 1053-1055 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T214 1253-1260 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T215 1328-1335 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T216 1399-1401 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T217 1422-1430 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T218 1463-1471 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T219 1580-1582 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T218 284-294 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulation
T219 309-324 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T220 522-542 http://purl.obolibrary.org/obo/GO_0008104 denotes protein localization
T221 530-542 http://purl.obolibrary.org/obo/GO_0051179 denotes localization
T222 1508-1515 http://purl.obolibrary.org/obo/GO_0007114 denotes budding

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
505 104-114 Species denotes SARS-CoV-2 Tax:2697049
511 457-458 Gene denotes M Gene:43740571
512 520-521 Gene denotes M Gene:43740571
513 380-390 Species denotes SARS-CoV-2 Tax:2697049
514 366-374 Disease denotes infected MESH:D007239
515 353-359 CellLine denotes Caco-2 CVCL:0025
519 754-764 Species denotes SARS-CoV-2 Tax:2697049
520 718-726 Disease denotes infected MESH:D007239
521 727-733 CellLine denotes Caco-2 CVCL:0025
526 1024-1025 Gene denotes N Gene:43740575
527 949-959 Species denotes SARS-CoV-2 Tax:2697049
528 935-943 Disease denotes infected MESH:D007239
529 922-928 CellLine denotes Caco-2 CVCL:0025
532 1272-1280 Disease denotes infected MESH:D007239
533 1281-1287 CellLine denotes Caco-2 CVCL:0025
536 1497-1507 Species denotes SARS-CoV-2 Tax:2697049
537 1526-1528 CellLine denotes E6 CVCL:4582

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T206 0-70 Sentence denotes Figure 5 Colocalization of CK2 and Viral Proteins at Actin Protrusions
T207 71-176 Sentence denotes (A) Pathway of regulated PHs and SARS-CoV-2 interaction partners involved in cytoskeletal reorganization.
T208 177-279 Sentence denotes Dashed lines indicate downregulation of activity, while solid lines indicate upregulation of activity.
T209 280-348 Sentence denotes (B) Regulation of individual kinase activity or PHs depicted in (A).
T210 349-481 Sentence denotes (C) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.1 for 24 h prior to immunostaining for F-actin and M protein, as indicated.
T211 482-628 Sentence denotes Shown is a confocal section revealing M protein localization along and to the tip of filopodia (left) and magnification of the dashed box (right).
T212 629-765 Sentence denotes (D) Dot plot quantification of the number and length of filopodia in untreated (mock) or infected Caco-2 cells for 24 h with SARS-CoV-2.
T213 766-850 Sentence denotes Filopodium length was measured from the cortical actin to the tip of the filopodium.
T214 851-875 Sentence denotes Error bars represent SD.
T215 876-917 Sentence denotes Statistical testing by Mann-Whitney test.
T216 918-1082 Sentence denotes (E) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.01 for 24 h prior to immunostaining for F-actin, N protein, and casein kinase II (CK2) as indicated (left).
T217 1083-1151 Sentence denotes Shown is magnification of the dashed box as single channels (right).
T218 1152-1294 Sentence denotes (F) Magnification of the dashed box from (E) with quantification of colocalization between CK2 and N protein throughout infected Caco-2 cells.
T219 1295-1377 Sentence denotes Displayed is the proportion of N protein-positive particles colocalizing with CK2.
T220 1378-1402 Sentence denotes Error bars represent SD.
T221 1403-1563 Sentence denotes (G and H) Scanning electron microscopy (G) and transmission electron microscopy (H) images of SARS-CoV-2 budding from Vero E6 cell filopodia (black arrow in H).
T222 1564-1583 Sentence denotes See also Figure S3.