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LitCovid-PD-FMA-UBERON

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T249","span":{"begin":41,"end":49},"obj":"Body_part"},{"id":"T250","span":{"begin":53,"end":58},"obj":"Body_part"},{"id":"T251","span":{"begin":360,"end":365},"obj":"Body_part"},{"id":"T252","span":{"begin":445,"end":452},"obj":"Body_part"},{"id":"T253","span":{"begin":459,"end":466},"obj":"Body_part"},{"id":"T254","span":{"begin":522,"end":529},"obj":"Body_part"},{"id":"T255","span":{"begin":734,"end":739},"obj":"Body_part"},{"id":"T256","span":{"begin":815,"end":820},"obj":"Body_part"},{"id":"T257","span":{"begin":929,"end":934},"obj":"Body_part"},{"id":"T258","span":{"begin":1015,"end":1022},"obj":"Body_part"},{"id":"T259","span":{"begin":1026,"end":1033},"obj":"Body_part"},{"id":"T260","span":{"begin":1253,"end":1260},"obj":"Body_part"},{"id":"T261","span":{"begin":1288,"end":1293},"obj":"Body_part"},{"id":"T262","span":{"begin":1328,"end":1335},"obj":"Body_part"},{"id":"T263","span":{"begin":1529,"end":1533},"obj":"Body_part"}],"attributes":[{"id":"A249","pred":"fma_id","subj":"T249","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A250","pred":"fma_id","subj":"T250","obj":"http://purl.org/sig/ont/fma/fma67843"},{"id":"A251","pred":"fma_id","subj":"T251","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A252","pred":"fma_id","subj":"T252","obj":"http://purl.org/sig/ont/fma/fma67844"},{"id":"A253","pred":"fma_id","subj":"T253","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A254","pred":"fma_id","subj":"T254","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A255","pred":"fma_id","subj":"T255","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A256","pred":"fma_id","subj":"T256","obj":"http://purl.org/sig/ont/fma/fma67843"},{"id":"A257","pred":"fma_id","subj":"T257","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A258","pred":"fma_id","subj":"T258","obj":"http://purl.org/sig/ont/fma/fma67844"},{"id":"A259","pred":"fma_id","subj":"T259","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A260","pred":"fma_id","subj":"T260","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A261","pred":"fma_id","subj":"T261","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A262","pred":"fma_id","subj":"T262","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A263","pred":"fma_id","subj":"T263","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Figure 5 Colocalization of CK2 and Viral Proteins at Actin Protrusions\n(A) Pathway of regulated PHs and SARS-CoV-2 interaction partners involved in cytoskeletal reorganization. Dashed lines indicate downregulation of activity, while solid lines indicate upregulation of activity.\n(B) Regulation of individual kinase activity or PHs depicted in (A).\n(C) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.1 for 24 h prior to immunostaining for F-actin and M protein, as indicated. Shown is a confocal section revealing M protein localization along and to the tip of filopodia (left) and magnification of the dashed box (right).\n(D) Dot plot quantification of the number and length of filopodia in untreated (mock) or infected Caco-2 cells for 24 h with SARS-CoV-2. Filopodium length was measured from the cortical actin to the tip of the filopodium. Error bars represent SD. Statistical testing by Mann-Whitney test.\n(E) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.01 for 24 h prior to immunostaining for F-actin, N protein, and casein kinase II (CK2) as indicated (left). Shown is magnification of the dashed box as single channels (right).\n(F) Magnification of the dashed box from (E) with quantification of colocalization between CK2 and N protein throughout infected Caco-2 cells. Displayed is the proportion of N protein-positive particles colocalizing with CK2. Error bars represent SD.\n(G and H) Scanning electron microscopy (G) and transmission electron microscopy (H) images of SARS-CoV-2 budding from Vero E6 cell filopodia (black arrow in H).\nSee also Figure S3."}

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T11","span":{"begin":560,"end":563},"obj":"Body_part"},{"id":"T12","span":{"begin":828,"end":831},"obj":"Body_part"}],"attributes":[{"id":"A11","pred":"uberon_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/UBERON_2001840"},{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_2001840"}],"text":"Figure 5 Colocalization of CK2 and Viral Proteins at Actin Protrusions\n(A) Pathway of regulated PHs and SARS-CoV-2 interaction partners involved in cytoskeletal reorganization. Dashed lines indicate downregulation of activity, while solid lines indicate upregulation of activity.\n(B) Regulation of individual kinase activity or PHs depicted in (A).\n(C) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.1 for 24 h prior to immunostaining for F-actin and M protein, as indicated. Shown is a confocal section revealing M protein localization along and to the tip of filopodia (left) and magnification of the dashed box (right).\n(D) Dot plot quantification of the number and length of filopodia in untreated (mock) or infected Caco-2 cells for 24 h with SARS-CoV-2. Filopodium length was measured from the cortical actin to the tip of the filopodium. Error bars represent SD. Statistical testing by Mann-Whitney test.\n(E) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.01 for 24 h prior to immunostaining for F-actin, N protein, and casein kinase II (CK2) as indicated (left). Shown is magnification of the dashed box as single channels (right).\n(F) Magnification of the dashed box from (E) with quantification of colocalization between CK2 and N protein throughout infected Caco-2 cells. Displayed is the proportion of N protein-positive particles colocalizing with CK2. Error bars represent SD.\n(G and H) Scanning electron microscopy (G) and transmission electron microscopy (H) images of SARS-CoV-2 budding from Vero E6 cell filopodia (black arrow in H).\nSee also Figure S3."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T145","span":{"begin":104,"end":112},"obj":"Disease"},{"id":"T146","span":{"begin":380,"end":388},"obj":"Disease"},{"id":"T147","span":{"begin":754,"end":762},"obj":"Disease"},{"id":"T148","span":{"begin":949,"end":957},"obj":"Disease"},{"id":"T149","span":{"begin":1497,"end":1505},"obj":"Disease"}],"attributes":[{"id":"A145","pred":"mondo_id","subj":"T145","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A146","pred":"mondo_id","subj":"T146","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A147","pred":"mondo_id","subj":"T147","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A148","pred":"mondo_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A149","pred":"mondo_id","subj":"T149","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Figure 5 Colocalization of CK2 and Viral Proteins at Actin Protrusions\n(A) Pathway of regulated PHs and SARS-CoV-2 interaction partners involved in cytoskeletal reorganization. Dashed lines indicate downregulation of activity, while solid lines indicate upregulation of activity.\n(B) Regulation of individual kinase activity or PHs depicted in (A).\n(C) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.1 for 24 h prior to immunostaining for F-actin and M protein, as indicated. Shown is a confocal section revealing M protein localization along and to the tip of filopodia (left) and magnification of the dashed box (right).\n(D) Dot plot quantification of the number and length of filopodia in untreated (mock) or infected Caco-2 cells for 24 h with SARS-CoV-2. Filopodium length was measured from the cortical actin to the tip of the filopodium. Error bars represent SD. Statistical testing by Mann-Whitney test.\n(E) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.01 for 24 h prior to immunostaining for F-actin, N protein, and casein kinase II (CK2) as indicated (left). Shown is magnification of the dashed box as single channels (right).\n(F) Magnification of the dashed box from (E) with quantification of colocalization between CK2 and N protein throughout infected Caco-2 cells. Displayed is the proportion of N protein-positive particles colocalizing with CK2. Error bars represent SD.\n(G and H) Scanning electron microscopy (G) and transmission electron microscopy (H) images of SARS-CoV-2 budding from Vero E6 cell filopodia (black arrow in H).\nSee also Figure S3."}

LitCovid-PD-CLO

LitCovid-PD-CHEBI

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T208","span":{"begin":75,"end":82},"obj":"Chemical"},{"id":"T209","span":{"begin":459,"end":466},"obj":"Chemical"},{"id":"T210","span":{"begin":522,"end":529},"obj":"Chemical"},{"id":"T211","span":{"begin":872,"end":874},"obj":"Chemical"},{"id":"T212","span":{"begin":1026,"end":1033},"obj":"Chemical"},{"id":"T213","span":{"begin":1053,"end":1055},"obj":"Chemical"},{"id":"T214","span":{"begin":1253,"end":1260},"obj":"Chemical"},{"id":"T215","span":{"begin":1328,"end":1335},"obj":"Chemical"},{"id":"T216","span":{"begin":1399,"end":1401},"obj":"Chemical"},{"id":"T217","span":{"begin":1422,"end":1430},"obj":"Chemical"},{"id":"T218","span":{"begin":1463,"end":1471},"obj":"Chemical"},{"id":"T219","span":{"begin":1580,"end":1582},"obj":"Chemical"}],"attributes":[{"id":"A208","pred":"chebi_id","subj":"T208","obj":"http://purl.obolibrary.org/obo/CHEBI_34922"},{"id":"A209","pred":"chebi_id","subj":"T209","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A210","pred":"chebi_id","subj":"T210","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A211","pred":"chebi_id","subj":"T211","obj":"http://purl.obolibrary.org/obo/CHEBI_74807"},{"id":"A212","pred":"chebi_id","subj":"T212","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A213","pred":"chebi_id","subj":"T213","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"id":"A214","pred":"chebi_id","subj":"T214","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A215","pred":"chebi_id","subj":"T215","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A216","pred":"chebi_id","subj":"T216","obj":"http://purl.obolibrary.org/obo/CHEBI_74807"},{"id":"A217","pred":"chebi_id","subj":"T217","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A218","pred":"chebi_id","subj":"T218","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"},{"id":"A219","pred":"chebi_id","subj":"T219","obj":"http://purl.obolibrary.org/obo/CHEBI_29388"}],"text":"Figure 5 Colocalization of CK2 and Viral Proteins at Actin Protrusions\n(A) Pathway of regulated PHs and SARS-CoV-2 interaction partners involved in cytoskeletal reorganization. Dashed lines indicate downregulation of activity, while solid lines indicate upregulation of activity.\n(B) Regulation of individual kinase activity or PHs depicted in (A).\n(C) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.1 for 24 h prior to immunostaining for F-actin and M protein, as indicated. Shown is a confocal section revealing M protein localization along and to the tip of filopodia (left) and magnification of the dashed box (right).\n(D) Dot plot quantification of the number and length of filopodia in untreated (mock) or infected Caco-2 cells for 24 h with SARS-CoV-2. Filopodium length was measured from the cortical actin to the tip of the filopodium. Error bars represent SD. Statistical testing by Mann-Whitney test.\n(E) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.01 for 24 h prior to immunostaining for F-actin, N protein, and casein kinase II (CK2) as indicated (left). Shown is magnification of the dashed box as single channels (right).\n(F) Magnification of the dashed box from (E) with quantification of colocalization between CK2 and N protein throughout infected Caco-2 cells. Displayed is the proportion of N protein-positive particles colocalizing with CK2. Error bars represent SD.\n(G and H) Scanning electron microscopy (G) and transmission electron microscopy (H) images of SARS-CoV-2 budding from Vero E6 cell filopodia (black arrow in H).\nSee also Figure S3."}

LitCovid-PD-GO-BP

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T218","span":{"begin":284,"end":294},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T219","span":{"begin":309,"end":324},"obj":"http://purl.obolibrary.org/obo/GO_0016301"},{"id":"T220","span":{"begin":522,"end":542},"obj":"http://purl.obolibrary.org/obo/GO_0008104"},{"id":"T221","span":{"begin":530,"end":542},"obj":"http://purl.obolibrary.org/obo/GO_0051179"},{"id":"T222","span":{"begin":1508,"end":1515},"obj":"http://purl.obolibrary.org/obo/GO_0007114"}],"text":"Figure 5 Colocalization of CK2 and Viral Proteins at Actin Protrusions\n(A) Pathway of regulated PHs and SARS-CoV-2 interaction partners involved in cytoskeletal reorganization. Dashed lines indicate downregulation of activity, while solid lines indicate upregulation of activity.\n(B) Regulation of individual kinase activity or PHs depicted in (A).\n(C) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.1 for 24 h prior to immunostaining for F-actin and M protein, as indicated. Shown is a confocal section revealing M protein localization along and to the tip of filopodia (left) and magnification of the dashed box (right).\n(D) Dot plot quantification of the number and length of filopodia in untreated (mock) or infected Caco-2 cells for 24 h with SARS-CoV-2. Filopodium length was measured from the cortical actin to the tip of the filopodium. Error bars represent SD. Statistical testing by Mann-Whitney test.\n(E) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.01 for 24 h prior to immunostaining for F-actin, N protein, and casein kinase II (CK2) as indicated (left). Shown is magnification of the dashed box as single channels (right).\n(F) Magnification of the dashed box from (E) with quantification of colocalization between CK2 and N protein throughout infected Caco-2 cells. Displayed is the proportion of N protein-positive particles colocalizing with CK2. Error bars represent SD.\n(G and H) Scanning electron microscopy (G) and transmission electron microscopy (H) images of SARS-CoV-2 budding from Vero E6 cell filopodia (black arrow in H).\nSee also Figure S3."}

LitCovid-PubTator

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T206","span":{"begin":0,"end":70},"obj":"Sentence"},{"id":"T207","span":{"begin":71,"end":176},"obj":"Sentence"},{"id":"T208","span":{"begin":177,"end":279},"obj":"Sentence"},{"id":"T209","span":{"begin":280,"end":348},"obj":"Sentence"},{"id":"T210","span":{"begin":349,"end":481},"obj":"Sentence"},{"id":"T211","span":{"begin":482,"end":628},"obj":"Sentence"},{"id":"T212","span":{"begin":629,"end":765},"obj":"Sentence"},{"id":"T213","span":{"begin":766,"end":850},"obj":"Sentence"},{"id":"T214","span":{"begin":851,"end":875},"obj":"Sentence"},{"id":"T215","span":{"begin":876,"end":917},"obj":"Sentence"},{"id":"T216","span":{"begin":918,"end":1082},"obj":"Sentence"},{"id":"T217","span":{"begin":1083,"end":1151},"obj":"Sentence"},{"id":"T218","span":{"begin":1152,"end":1294},"obj":"Sentence"},{"id":"T219","span":{"begin":1295,"end":1377},"obj":"Sentence"},{"id":"T220","span":{"begin":1378,"end":1402},"obj":"Sentence"},{"id":"T221","span":{"begin":1403,"end":1563},"obj":"Sentence"},{"id":"T222","span":{"begin":1564,"end":1583},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Figure 5 Colocalization of CK2 and Viral Proteins at Actin Protrusions\n(A) Pathway of regulated PHs and SARS-CoV-2 interaction partners involved in cytoskeletal reorganization. Dashed lines indicate downregulation of activity, while solid lines indicate upregulation of activity.\n(B) Regulation of individual kinase activity or PHs depicted in (A).\n(C) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.1 for 24 h prior to immunostaining for F-actin and M protein, as indicated. Shown is a confocal section revealing M protein localization along and to the tip of filopodia (left) and magnification of the dashed box (right).\n(D) Dot plot quantification of the number and length of filopodia in untreated (mock) or infected Caco-2 cells for 24 h with SARS-CoV-2. Filopodium length was measured from the cortical actin to the tip of the filopodium. Error bars represent SD. Statistical testing by Mann-Whitney test.\n(E) Caco-2 cells infected with SARS-CoV-2 at an MOI of 0.01 for 24 h prior to immunostaining for F-actin, N protein, and casein kinase II (CK2) as indicated (left). Shown is magnification of the dashed box as single channels (right).\n(F) Magnification of the dashed box from (E) with quantification of colocalization between CK2 and N protein throughout infected Caco-2 cells. Displayed is the proportion of N protein-positive particles colocalizing with CK2. Error bars represent SD.\n(G and H) Scanning electron microscopy (G) and transmission electron microscopy (H) images of SARS-CoV-2 budding from Vero E6 cell filopodia (black arrow in H).\nSee also Figure S3."}

PMC:7321036 / 32244-33827 JSONTXT

Annnotations TAB JSON ListView MergeView

PMC:7321036 / 32244-33827 JSON TXT