PMC:7306567 / 10902-12362
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T15 | 242-247 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T13 | 242-247 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 113 | 31-44 | Disease | denotes | invasive mold | MESH:D009361 |
| 114 | 67-78 | Disease | denotes | neutropenic | MESH:D009503 |
| 115 | 132-146 | Disease | denotes | critically ill | MESH:D016638 |
| 116 | 211-240 | Disease | denotes | Aspergillus tracheobronchitis | MESH:D001228 |
| 117 | 320-365 | Disease | denotes | airway-invasive Aspergillus tracheobronchitis | MESH:D001228 |
| 118 | 408-414 | Disease | denotes | ulcers | MESH:D014456 |
| 119 | 527-548 | Disease | denotes | pulmonary infiltrates | MESH:D017254 |
| 120 | 614-618 | Disease | denotes | ARDS | MESH:D012128 |
| 121 | 622-641 | Disease | denotes | bacterial infection | MESH:D001424 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T58 | 223-240 | Disease | denotes | tracheobronchitis | http://purl.obolibrary.org/obo/MONDO_0021925 |
| T59 | 348-365 | Disease | denotes | tracheobronchitis | http://purl.obolibrary.org/obo/MONDO_0021925 |
| T60 | 408-414 | Disease | denotes | ulcers | http://purl.obolibrary.org/obo/MONDO_0043839 |
| T61 | 566-575 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T62 | 614-618 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T63 | 622-641 | Disease | denotes | bacterial infection | http://purl.obolibrary.org/obo/MONDO_0005113 |
| T64 | 632-641 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T65 | 853-862 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T68 | 242-247 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T69 | 320-326 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airway |
| T70 | 369-379 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T71 | 654-655 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T72 | 1023-1028 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T73 | 1279-1281 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T74 | 1306-1310 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T75 | 1404-1409 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T58 | 666-679 | Chemical | denotes | antimicrobial | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T59 | 771-781 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
| T60 | 973-983 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
| T61 | 1093-1096 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T63 | 1147-1149 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T8 | 1147-1149 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T19 | 527-548 | Phenotype | denotes | pulmonary infiltrates | http://purl.obolibrary.org/obo/HP_0002113 |
| T20 | 1093-1096 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T72 | 0-156 | Sentence | denotes | Lesions that are suggestive of invasive mold disease on imaging in neutropenic patients, such as the halo sign, are often absent in critically ill patients. |
| T73 | 157-290 | Sentence | denotes | However, in some IAPA patients with autopsy-confirmed Aspergillus tracheobronchitis, chest CT demonstrated peribronchial infiltrates. |
| T74 | 291-500 | Sentence | denotes | The main diagnostic clue for airway-invasive Aspergillus tracheobronchitis is epithelial plaques, pseudomembranes or ulcers that can be visualized via bronchoscopy, as radiological features may be subtle [31]. |
| T75 | 501-734 | Sentence | denotes | Worsening of radiographic pulmonary infiltrates in patients with influenza is often attributed to progression of ARDS or bacterial infection, leading to a change of antimicrobial therapy without performing diagnostic procedures [32]. |
| T76 | 735-1009 | Sentence | denotes | Patients who survived IAPA received antifungal therapy much earlier than those who did not (2 days after diagnosis of influenza among survivors versus 9 days among non-survivors) [8], suggesting that early diagnosis and administration of antifungal therapy may be important. |
| T77 | 1010-1218 | Sentence | denotes | Lateral flow tests have recently become available as an alternative for diagnosing IPA (AspLFD, OLM Diagnostics and the sōna Aspergillus GM, IMMY) showing overall good performance in hematology patients [33]. |
| T78 | 1219-1381 | Sentence | denotes | The very quick assessment, with results available within 30–45 min, makes this type of test very attractive for the management of IAPA and use in clinical trials. |
| T79 | 1382-1460 | Sentence | denotes | However, lateral flow tests have not yet been validated in the ICU population. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T79 | 211-222 | NCBITaxon:5052 | denotes | Aspergillus |
| T80 | 223-240 | UBERON:0007196 | denotes | tracheobronchitis |
| T81 | 242-247 | UBERON:0001443 | denotes | chest |
| T82 | 264-277 | UBERON:0001845 | denotes | peribronchial |
| T83 | 320-326 | UBERON:0001005 | denotes | airway |
| T84 | 336-347 | NCBITaxon:5052 | denotes | Aspergillus |
| T85 | 348-365 | UBERON:0007196 | denotes | tracheobronchitis |
| T86 | 369-379 | UBERON:0000483 | denotes | epithelial |
| T87 | 527-536 | UBERON:0002048 | denotes | pulmonary |
| T88 | 622-631 | NCBITaxon:2 | denotes | bacterial |
| T89 | 666-679 | CHEBI:35718;CHEBI:35718 | denotes | antimicrobial |
| T48603 | 211-222 | NCBITaxon:5052 | denotes | Aspergillus |
| T84469 | 223-240 | UBERON:0007196 | denotes | tracheobronchitis |
| T9111 | 242-247 | UBERON:0001443 | denotes | chest |
| T12913 | 264-277 | UBERON:0001845 | denotes | peribronchial |
| T37746 | 320-326 | UBERON:0001005 | denotes | airway |
| T32093 | 336-347 | NCBITaxon:5052 | denotes | Aspergillus |
| T90534 | 348-365 | UBERON:0007196 | denotes | tracheobronchitis |
| T78753 | 369-379 | UBERON:0000483 | denotes | epithelial |
| T63798 | 527-536 | UBERON:0002048 | denotes | pulmonary |
| T2169 | 622-631 | NCBITaxon:2 | denotes | bacterial |
| T80813 | 666-679 | CHEBI:35718;CHEBI:35718 | denotes | antimicrobial |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32572532-31102782-47963423 | 496-498 | 31102782 | denotes | 31 |
| 32572532-27177530-47963424 | 730-732 | 27177530 | denotes | 32 |
| 32572532-28387526-47963425 | 915-916 | 28387526 | denotes | 8 |
| 32572532-31292663-47963426 | 1214-1216 | 31292663 | denotes | 33 |
| T30112 | 496-498 | 31102782 | denotes | 31 |
| T25822 | 730-732 | 27177530 | denotes | 32 |
| T48506 | 915-916 | 28387526 | denotes | 8 |
| T39271 | 1214-1216 | 31292663 | denotes | 33 |