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PMC:7301188 / 3533-4837 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T30 88-94 NCBITaxon:859912 denotes Corona
T31 399-408 UBERON:0002048 denotes pneumonia
T32 482-499 UBERON:0000065 denotes respiratory tract
T33 514-523 UBERON:0002048 denotes pneumonia
T34 605-616 UBERON:0001004 denotes respiratory
T35 707-715 UBERON:0001637 denotes arterial
T36 874-883 UBERON:0002048 denotes pulmonary
T37 967-978 UBERON:0001004 denotes respiratory
T38 1075-1080 UBERON:0000062 denotes organ
T39 1298-1303 GO:0016265 denotes death
T55122 88-94 NCBITaxon:859912 denotes Corona
T25183 399-408 UBERON:0002048 denotes pneumonia
T28285 482-499 UBERON:0000065 denotes respiratory tract
T87513 514-523 UBERON:0002048 denotes pneumonia
T92813 605-616 UBERON:0001004 denotes respiratory
T4800 707-715 UBERON:0001637 denotes arterial
T31469 874-883 UBERON:0002048 denotes pulmonary
T70684 967-978 UBERON:0001004 denotes respiratory
T87749 1075-1080 UBERON:0000062 denotes organ
T90276 1298-1303 GO:0016265 denotes death

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 482-499 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T5 1075-1080 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 482-499 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T4 1075-1080 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
106 210-216 Species denotes People Tax:9606
107 811-819 Species denotes Patients Tax:9606
108 652-658 Chemical denotes oxygen MESH:D010100
109 736-742 Chemical denotes oxygen MESH:D010100
110 750-756 Chemical denotes oxygen MESH:D010100
111 772-776 Chemical denotes FiO2
112 88-113 Disease denotes Corona Virus Disease 2019 MESH:C000657245
113 399-408 Disease denotes pneumonia MESH:D011014
114 472-477 Disease denotes fever MESH:D005334
115 482-508 Disease denotes respiratory tract symptoms MESH:D012140
116 514-523 Disease denotes pneumonia MESH:D011014
117 605-625 Disease denotes respiratory distress MESH:D012128
118 967-986 Disease denotes respiratory failure MESH:D012131
119 1075-1088 Disease denotes organ failure MESH:D009102
121 1155-1162 Disease denotes Illness MESH:D002908
123 1298-1303 Disease denotes death MESH:D003643

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 88-113 Disease denotes Corona Virus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T42 399-408 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T43 514-523 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T44 967-986 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T37 95-100 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T38 690-691 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 707-715 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T40 707-715 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T41 862-864 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T42 1075-1080 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T25 627-629 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T26 652-658 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T27 736-742 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T28 750-756 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T37 0-4 Sentence denotes 2.2.
T38 5-29 Sentence denotes Clinical Classifications
T39 31-37 Sentence denotes 2.2.1.
T40 38-57 Sentence denotes Case Identification
T41 58-114 Sentence denotes According to the Guidance for Corona Virus Disease 2019:
T42 115-810 Sentence denotes Prevention, Control, Diagnosis, and Management edited by the National Health Commission of the People's Republic of China, all cases were identified into four categories of mild cases, ordinary cases, severe cases, and critical cases. (1) Mild cases had mild clinical symptoms and no pneumonia manifestation in imaging. (2) Ordinary cases had symptoms like fever and respiratory tract symptoms, and pneumonia manifestation can be seen in imaging. (3) Severe cases met any of the following: respiratory distress, RR ≥ 30 breaths/min; the oxygen saturation is less than 93% at a rest state; or arterial partial pressure of oxygen (PaO2)/oxygen concentration (FiO2) ≤ 300 mmHg (1 mmHg = 0.133 kPa).
T43 811-1135 Sentence denotes Patients with >50% lesion progression within 24 to 48 hours in pulmonary imaging were treated as severe cases. (4) Critical cases met any of the following: respiratory failure occurs, and mechanical ventilation is required; shock occurs; or complicated with other organ failure that requires monitoring and treatment in ICU.
T44 1137-1143 Sentence denotes 2.2.2.
T45 1144-1162 Sentence denotes Outcome of Illness
T46 1163-1304 Sentence denotes According to clinical progression, outcomes in endpoints were divided into four types: hospital discharge, improved, exacerbation, and death.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 399-408 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 472-477 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 514-523 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 605-625 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T7 967-986 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T8 1035-1040 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273