PMC:7295558 / 7524-8566 JSONTXT

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T66","span":{"begin":14,"end":17},"obj":"NCBITaxon:9606"},{"id":"T67","span":{"begin":26,"end":31},"obj":"SP_6;NCBITaxon:9606"},{"id":"T68","span":{"begin":49,"end":54},"obj":"NCBITaxon:10239"},{"id":"T69","span":{"begin":87,"end":89},"obj":"GO:0005783"},{"id":"T70","span":{"begin":371,"end":382},"obj":"UBERON:0001004"},{"id":"T71","span":{"begin":568,"end":579},"obj":"UBERON:0002082"},{"id":"T72","span":{"begin":642,"end":646},"obj":"UBERON:0002084"},{"id":"T73","span":{"begin":749,"end":754},"obj":"UBERON:0001443"},{"id":"T74","span":{"begin":848,"end":859},"obj":"CHEBI:33282;CHEBI:33282"},{"id":"T75","span":{"begin":916,"end":926},"obj":"NCBITaxon:570"},{"id":"T76","span":{"begin":927,"end":930},"obj":"NCBITaxon:species"},{"id":"T77","span":{"begin":948,"end":960},"obj":"UBERON:0001852"},{"id":"T78","span":{"begin":1034,"end":1041},"obj":"GO:0016265"},{"id":"T85550","span":{"begin":14,"end":17},"obj":"NCBITaxon:9606"},{"id":"T18182","span":{"begin":26,"end":31},"obj":"SP_6;NCBITaxon:9606"},{"id":"T92183","span":{"begin":49,"end":54},"obj":"NCBITaxon:10239"},{"id":"T99155","span":{"begin":87,"end":89},"obj":"GO:0005783"},{"id":"T70236","span":{"begin":371,"end":382},"obj":"UBERON:0001004"},{"id":"T71418","span":{"begin":568,"end":579},"obj":"UBERON:0002082"},{"id":"T97114","span":{"begin":642,"end":646},"obj":"UBERON:0002084"},{"id":"T48829","span":{"begin":749,"end":754},"obj":"UBERON:0001443"},{"id":"T47896","span":{"begin":848,"end":859},"obj":"CHEBI:33282;CHEBI:33282"},{"id":"T62233","span":{"begin":916,"end":926},"obj":"NCBITaxon:570"},{"id":"T65393","span":{"begin":927,"end":930},"obj":"NCBITaxon:species"},{"id":"T64938","span":{"begin":948,"end":960},"obj":"UBERON:0001852"},{"id":"T21215","span":{"begin":1034,"end":1041},"obj":"GO:0016265"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T18","span":{"begin":56,"end":59},"obj":"Body_part"},{"id":"T19","span":{"begin":749,"end":754},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma9576"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T10","span":{"begin":749,"end":754},"obj":"Body_part"}],"attributes":[{"id":"A10","pred":"uberon_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T50","span":{"begin":32,"end":48},"obj":"Disease"},{"id":"T51","span":{"begin":154,"end":156},"obj":"Disease"},{"id":"T52","span":{"begin":288,"end":290},"obj":"Disease"},{"id":"T53","span":{"begin":358,"end":360},"obj":"Disease"},{"id":"T54","span":{"begin":802,"end":811},"obj":"Disease"},{"id":"T55","span":{"begin":998,"end":1000},"obj":"Disease"}],"attributes":[{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0021094"},{"id":"A51","pred":"mondo_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A52","pred":"mondo_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A53","pred":"mondo_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A55","pred":"mondo_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T88","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T89","span":{"begin":26,"end":31},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T90","span":{"begin":49,"end":54},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T91","span":{"begin":95,"end":96},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T92","span":{"begin":295,"end":296},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T93","span":{"begin":500,"end":501},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T94","span":{"begin":620,"end":621},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T95","span":{"begin":630,"end":632},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T96","span":{"begin":749,"end":754},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T97","span":{"begin":765,"end":766},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T34","span":{"begin":848,"end":859},"obj":"Chemical"}],"attributes":[{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_33281"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-sentences","denotations":[{"id":"T97","span":{"begin":0,"end":135},"obj":"Sentence"},{"id":"T98","span":{"begin":136,"end":225},"obj":"Sentence"},{"id":"T99","span":{"begin":226,"end":272},"obj":"Sentence"},{"id":"T100","span":{"begin":273,"end":320},"obj":"Sentence"},{"id":"T101","span":{"begin":321,"end":415},"obj":"Sentence"},{"id":"T102","span":{"begin":416,"end":499},"obj":"Sentence"},{"id":"T103","span":{"begin":500,"end":664},"obj":"Sentence"},{"id":"T104","span":{"begin":665,"end":873},"obj":"Sentence"},{"id":"T105","span":{"begin":874,"end":980},"obj":"Sentence"},{"id":"T106","span":{"begin":981,"end":1042},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T21","span":{"begin":32,"end":48},"obj":"Phenotype"},{"id":"T22","span":{"begin":114,"end":122},"obj":"Phenotype"},{"id":"T23","span":{"begin":127,"end":134},"obj":"Phenotype"},{"id":"T24","span":{"begin":371,"end":396},"obj":"Phenotype"},{"id":"T25","span":{"begin":423,"end":428},"obj":"Phenotype"},{"id":"T26","span":{"begin":527,"end":532},"obj":"Phenotype"},{"id":"T27","span":{"begin":802,"end":811},"obj":"Phenotype"},{"id":"T28","span":{"begin":961,"end":971},"obj":"Phenotype"},{"id":"T29","span":{"begin":1019,"end":1029},"obj":"Phenotype"}],"attributes":[{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0002721"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0002315"},{"id":"A23","pred":"hp_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/HP_0012378"},{"id":"A24","pred":"hp_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/HP_0002093"},{"id":"A25","pred":"hp_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/HP_0031273"},{"id":"A26","pred":"hp_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/HP_0031273"},{"id":"A27","pred":"hp_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A28","pred":"hp_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/HP_0002835"},{"id":"A29","pred":"hp_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/HP_0002105"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}

{"project":"LitCovid-PubTator","denotations":[{"id":"142","span":{"begin":26,"end":54},"obj":"Species"},{"id":"143","span":{"begin":56,"end":59},"obj":"Species"},{"id":"144","span":{"begin":114,"end":122},"obj":"Disease"},{"id":"145","span":{"begin":371,"end":396},"obj":"Disease"},{"id":"146","span":{"begin":416,"end":428},"obj":"Disease"},{"id":"147","span":{"begin":802,"end":811},"obj":"Disease"},{"id":"148","span":{"begin":916,"end":930},"obj":"Disease"},{"id":"149","span":{"begin":1019,"end":1029},"obj":"Disease"}],"attributes":[{"id":"A142","pred":"tao:has_database_id","subj":"142","obj":"Tax:12721"},{"id":"A143","pred":"tao:has_database_id","subj":"143","obj":"Tax:12721"},{"id":"A144","pred":"tao:has_database_id","subj":"144","obj":"MESH:D006261"},{"id":"A145","pred":"tao:has_database_id","subj":"145","obj":"MESH:D012131"},{"id":"A146","pred":"tao:has_database_id","subj":"146","obj":"MESH:D012772"},{"id":"A147","pred":"tao:has_database_id","subj":"147","obj":"MESH:D011014"},{"id":"A148","pred":"tao:has_database_id","subj":"148","obj":"MESH:D007710"},{"id":"A149","pred":"tao:has_database_id","subj":"149","obj":"MESH:D006469"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise. On interrogation, he referred traveling to the United States during the previous 2 weeks. Baseline characteristics are shown in Table 1. On admittance, he had a temperature of 38.3 °C. On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated. Septic shock was diagnosed on the eighth day and vasopressor support was initiated. A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2). During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started. This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture. On his 21st day, he presented massive hemoptysis and expired."}