PMC:7295558 / 7524-8566 JSON TXT

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Id	Subject	Object	Predicate	Lexical cue
T66	14-17	NCBITaxon:9606	denotes	man
T67	26-31	SP_6;NCBITaxon:9606	denotes	human
T68	49-54	NCBITaxon:10239	denotes	virus
T69	87-89	GO:0005783	denotes	ER
T70	371-382	UBERON:0001004	denotes	respiratory
T71	568-579	UBERON:0002082	denotes	ventricular
T72	642-646	UBERON:0002084	denotes	LVEF
T73	749-754	UBERON:0001443	denotes	chest
T74	848-859	CHEBI:33282;CHEBI:33282	denotes	antibiotics
T75	916-926	NCBITaxon:570	denotes	Klebsiella
T76	927-930	NCBITaxon:species	denotes	spp
T77	948-960	UBERON:0001852	denotes	endotracheal
T78	1034-1041	GO:0016265	denotes	expired
T85550	14-17	NCBITaxon:9606	denotes	man
T18182	26-31	SP_6;NCBITaxon:9606	denotes	human
T92183	49-54	NCBITaxon:10239	denotes	virus
T99155	87-89	GO:0005783	denotes	ER
T70236	371-382	UBERON:0001004	denotes	respiratory
T71418	568-579	UBERON:0002082	denotes	ventricular
T97114	642-646	UBERON:0002084	denotes	LVEF
T48829	749-754	UBERON:0001443	denotes	chest
T47896	848-859	CHEBI:33282;CHEBI:33282	denotes	antibiotics
T62233	916-926	NCBITaxon:570	denotes	Klebsiella
T65393	927-930	NCBITaxon:species	denotes	spp
T64938	948-960	UBERON:0001852	denotes	endotracheal
T21215	1034-1041	GO:0016265	denotes	expired

Id	Subject	Object	Predicate	Lexical cue	fma_id
T18	56-59	Body_part	denotes	HIV	http://purl.org/sig/ont/fma/fma278683
T19	749-754	Body_part	denotes	chest	http://purl.org/sig/ont/fma/fma9576

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T10	749-754	Body_part	denotes	chest	http://purl.obolibrary.org/obo/UBERON_0001443

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T50	32-48	Disease	denotes	immunodeficiency	http://purl.obolibrary.org/obo/MONDO_0021094
T51	154-156	Disease	denotes	he	http://purl.obolibrary.org/obo/MONDO_0017319
T52	288-290	Disease	denotes	he	http://purl.obolibrary.org/obo/MONDO_0017319
T53	358-360	Disease	denotes	he	http://purl.obolibrary.org/obo/MONDO_0017319
T54	802-811	Disease	denotes	pneumonia	http://purl.obolibrary.org/obo/MONDO_0005249
T55	998-1000	Disease	denotes	he	http://purl.obolibrary.org/obo/MONDO_0017319

Id	Subject	Object	Predicate	Lexical cue
T88	0-1	http://purl.obolibrary.org/obo/CLO_0001020	denotes	A
T89	26-31	http://purl.obolibrary.org/obo/NCBITaxon_9606	denotes	human
T90	49-54	http://purl.obolibrary.org/obo/NCBITaxon_10239	denotes	virus
T91	95-96	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T92	295-296	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T93	500-501	http://purl.obolibrary.org/obo/CLO_0001020	denotes	A
T94	620-621	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T95	630-632	http://purl.obolibrary.org/obo/CLO_0050510	denotes	18
T96	749-754	http://www.ebi.ac.uk/efo/EFO_0000965	denotes	chest
T97	765-766	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a

Id	Subject	Object	Predicate	Lexical cue	chebi_id
T34	848-859	Chemical	denotes	antibiotics	http://purl.obolibrary.org/obo/CHEBI_33281

Id	Subject	Object	Predicate	Lexical cue
T97	0-135	Sentence	denotes	A 64-year-old man who was human immunodeficiency virus (HIV)-positive presented to the ER with a 4-day history of headache and malaise.
T98	136-225	Sentence	denotes	On interrogation, he referred traveling to the United States during the previous 2 weeks.
T99	226-272	Sentence	denotes	Baseline characteristics are shown in Table 1.
T100	273-320	Sentence	denotes	On admittance, he had a temperature of 38.3 °C.
T101	321-415	Sentence	denotes	On his seventh day of hospital stay, he developed respiratory insufficiency and was intubated.
T102	416-499	Sentence	denotes	Septic shock was diagnosed on the eighth day and vasopressor support was initiated.
T103	500-664	Sentence	denotes	A TTE was done to evaluate shock etiology, which showed an abnormal ventricular geometry with concentric remodeling and a GLS of -18% with an LVEF of 66% (Table 2).
T104	665-873	Sentence	denotes	During his time in the ICU, on day 14, the subject developed new infiltrates on his chest X-ray, so a diagnosis of ventilator-associated pneumonia was entertained, and broad-spectrum antibiotics were started.
T105	874-980	Sentence	denotes	This was eventually found to be caused by Klebsiella spp, according to an endotracheal aspiration culture.
T106	981-1042	Sentence	denotes	On his 21st day, he presented massive hemoptysis and expired.

Id	Subject	Object	Predicate	Lexical cue	hp_id
T21	32-48	Phenotype	denotes	immunodeficiency	http://purl.obolibrary.org/obo/HP_0002721
T22	114-122	Phenotype	denotes	headache	http://purl.obolibrary.org/obo/HP_0002315
T23	127-134	Phenotype	denotes	malaise	http://purl.obolibrary.org/obo/HP_0012378
T24	371-396	Phenotype	denotes	respiratory insufficiency	http://purl.obolibrary.org/obo/HP_0002093
T25	423-428	Phenotype	denotes	shock	http://purl.obolibrary.org/obo/HP_0031273
T26	527-532	Phenotype	denotes	shock	http://purl.obolibrary.org/obo/HP_0031273
T27	802-811	Phenotype	denotes	pneumonia	http://purl.obolibrary.org/obo/HP_0002090
T28	961-971	Phenotype	denotes	aspiration	http://purl.obolibrary.org/obo/HP_0002835
T29	1019-1029	Phenotype	denotes	hemoptysis	http://purl.obolibrary.org/obo/HP_0002105

Id	Subject	Object	Predicate	Lexical cue	tao:has_database_id
142	26-54	Species	denotes	human immunodeficiency virus	Tax:12721
143	56-59	Species	denotes	HIV	Tax:12721
144	114-122	Disease	denotes	headache	MESH:D006261
145	371-396	Disease	denotes	respiratory insufficiency	MESH:D012131
146	416-428	Disease	denotes	Septic shock	MESH:D012772
147	802-811	Disease	denotes	pneumonia	MESH:D011014
148	916-930	Disease	denotes	Klebsiella spp	MESH:D007710
149	1019-1029	Disease	denotes	hemoptysis	MESH:D006469