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PMC:7283670 / 50500-51931 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T87365 1061-1068 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T176 240-245 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T177 257-268 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T178 315-325 Body_part denotes neutrophil http://purl.org/sig/ont/fma/fma62860
T179 483-488 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T180 537-543 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T181 639-644 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T182 1055-1060 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T183 1061-1068 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T184 1070-1075 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T185 1209-1213 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T121 240-245 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T122 537-543 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T123 578-584 Body_part denotes phlegm http://purl.obolibrary.org/obo/UBERON_0016552
T124 639-644 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T125 1055-1060 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T126 1070-1075 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T127 1209-1213 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T301 100-113 Disease denotes alcohol abuse http://purl.obolibrary.org/obo/MONDO_0002046
T302 168-172 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T303 608-619 Disease denotes runny noses http://purl.obolibrary.org/obo/MONDO_0003014
T304 704-716 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T305 1169-1173 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T504 58-59 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T505 213-215 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T506 235-238 http://purl.obolibrary.org/obo/CLO_0002199 denotes car
T507 240-245 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T508 240-245 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T509 394-399 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T510 483-488 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T511 537-543 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T512 614-619 http://www.ebi.ac.uk/efo/EFO_0000828 denotes noses
T513 639-644 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T514 866-871 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T515 886-887 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T516 1055-1060 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T517 1055-1060 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T518 1070-1075 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T519 1070-1075 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T520 1209-1213 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T521 1209-1213 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T522 1277-1282 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T59475 100-107 Chemical denotes alcohol http://purl.obolibrary.org/obo/CHEBI_16236|http://purl.obolibrary.org/obo/CHEBI_30879
T53088 780-789 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T65033 820-838 Chemical denotes methylprednisolone http://purl.obolibrary.org/obo/CHEBI_6888
T41881 872-882 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T15988 911-933 Chemical denotes ambroxol hydrochloride http://purl.obolibrary.org/obo/CHEBI_135590
T4313 920-933 Chemical denotes hydrochloride http://purl.obolibrary.org/obo/CHEBI_36807
T10576 948-974 Chemical denotes moxifloxacin hydrochloride http://purl.obolibrary.org/obo/CHEBI_7008
T76994 948-960 Chemical denotes moxifloxacin http://purl.obolibrary.org/obo/CHEBI_63611
T88689 961-974 Chemical denotes hydrochloride http://purl.obolibrary.org/obo/CHEBI_36807
T24045 1015-1021 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T15 1061-1068 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T17 1343-1352 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T84005 1394-1412 Chemical denotes methylprednisolone http://purl.obolibrary.org/obo/CHEBI_6888
T19 1413-1423 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T570 0-246 Sentence denotes Han et al. (2020) Case study/People's Hospital in Wuwei A 47‐year‐old man/smoking for 20 years/no alcohol abuse RT‐PCR, CT Nasopharyngeal swab specimens Confirmed SARS‐CoV‐2/returned to Wuwei city on January 18 from Wuhan city by car Blood:
T571 247-346 Sentence denotes decreased lymphocytes, increased CRP, slightly elevated fibrinogen, neutrophil, LDH, and fibrinogen
T572 347-399 Sentence denotes PCR: positive for expression of RdRPN, N and E genes
T573 400-748 Sentence denotes CT: multiple patchy high‐density shadows scattered mainly in the border regions of lungs, solid changes, GGO changes, slightly thickened pleura Fever, cough productive of white phlegm, bosom frowsty, stuffy/runny noses, vertigo, fatigue, chest tightness, nausea, expiratory dyspnea, poor diet, lethargy/hypertension grade 2 and T2D – – Therapy:
T574 749-779 Sentence denotes combination therapy including:
T575 780-1109 Sentence denotes Lopinavir/Ritonavir (800/200 mg daily), methylprednisolone (40 mg daily), recombinant human interferon α‐2b (10 million IU daily), ambroxol hydrochloride (60 mg daily) moxifloxacin hydrochloride (0.4 g daily), high flow humidification oxygen inhalation therapy, treatment of blood glucose, blood pressure, and rehydration therapy
T576 1110-1265 Sentence denotes Results interpretation: the persistent negative results of SARS‐CoV‐2 on days 6 and 7, normal TLC, lung lesions partially absorbed, The patient discharged.
T577 1266-1431 Sentence denotes Laboratory tests like TLC are necessary, CT combined with RT‐PCR is helpful, Lopinavir/Ritonavir are effective after failure of methylprednisolone/interferon alfa‐2b

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T193 545-550 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T194 552-557 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T195 621-628 Phenotype denotes vertigo http://purl.obolibrary.org/obo/HP_0002321
T196 630-637 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T197 639-654 Phenotype denotes chest tightness http://purl.obolibrary.org/obo/HP_0031352
T198 656-662 Phenotype denotes nausea http://purl.obolibrary.org/obo/HP_0002018
T199 675-682 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T200 695-703 Phenotype denotes lethargy http://purl.obolibrary.org/obo/HP_0001254
T201 704-716 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1100 280-283 Gene denotes CRP Gene:1401
1101 872-887 Gene denotes interferon α‐2b Gene:3440
1102 303-313 Gene denotes fibrinogen Gene:2244
1197 30-36 Species denotes People Tax:9606
1198 168-178 Species denotes SARS‐CoV‐2 Tax:2697049
1199 866-871 Species denotes human Tax:9606
1200 1169-1179 Species denotes SARS‐CoV‐2 Tax:2697049
1201 1246-1253 Species denotes patient Tax:9606
1218 780-799 Chemical denotes Lopinavir/Ritonavir MESH:C558899
1219 1343-1362 Chemical denotes Lopinavir/Ritonavir MESH:C558899
1394 537-550 Disease denotes pleura Fever MESH:D005334
1395 552-557 Disease denotes cough MESH:D003371
1396 621-628 Disease denotes vertigo MESH:D014717
1397 630-637 Disease denotes fatigue MESH:D005221
1398 639-654 Disease denotes chest tightness MESH:D002637
1399 656-662 Disease denotes nausea MESH:D009325
1400 675-682 Disease denotes dyspnea MESH:D004417
1401 695-703 Disease denotes lethargy MESH:D053609
1402 704-716 Disease denotes hypertension MESH:D006973
1403 1055-1068 Disease denotes blood glucose MESH:D007022
1404 1209-1221 Disease denotes lung lesions MESH:D008171