PMC:7283670 / 29187-30888
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T47668 | 809-814 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T97866 | 1492-1498 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T6958 | 1502-1507 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T57 | 809-814 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T58 | 1492-1498 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T59 | 1502-1507 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T170 | 199-207 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T171 | 219-228 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T172 | 274-278 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T173 | 297-299 | Disease | denotes | EI | http://purl.obolibrary.org/obo/MONDO_0007239 |
| T174 | 790-805 | Disease | denotes | viral pneumonia | http://purl.obolibrary.org/obo/MONDO_0006012 |
| T175 | 796-805 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T176 | 874-882 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T177 | 1350-1358 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T178 | 1449-1453 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T294 | 129-141 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T295 | 315-327 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T296 | 387-388 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T297 | 420-421 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T298 | 684-685 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T299 | 809-814 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T300 | 1025-1029 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T301 | 1048-1060 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T302 | 1244-1256 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T303 | 1411-1412 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T304 | 1502-1507 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T305 | 1502-1507 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T65 | 297-299 | Chemical | denotes | EI | http://purl.obolibrary.org/obo/CHEBI_141436|http://purl.obolibrary.org/obo/CHEBI_30969 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T232 | 0-28 | Sentence | denotes | 5.2 Epidemiological history |
| T233 | 29-342 | Sentence | denotes | Shortly after the onset of the epidemic, The National Health Commission of China (Committee, 2020a; Organization, 2020a) initiated the Diagnosis and Treatment Program of COVID‐19‐associated pneumonia, following the guidelines provided by WHO on SARS and MERS (Azhar & EI‐Kafrawy, 2014; Organization, 2017, 2020b). |
| T234 | 343-542 | Sentence | denotes | According to the newly formulated criteria, a “suspected case” is defined as a patient with epidemiological history, that is traveling and contact, and two clinical findings pertinent to the disease. |
| T235 | 543-701 | Sentence | denotes | If, however, an epidemiological history is not confirmed, then the patient must present at least three clinical findings to be considered as a suspected case. |
| T236 | 702-883 | Sentence | denotes | Based on the Trial, Fifth Edition (Committee, 2020b), pathologic findings indicative of viral pneumonia on chest CT scans provide enough evidence for clinical diagnosis of COVID‐19. |
| T237 | 884-1069 | Sentence | denotes | Nonetheless, as of February 17, 2020, WHO does not approve of any diagnosis based solely on radiologic findings, without obtaining an RT‐PCR test from the patient (Organization, 2020c). |
| T238 | 1070-1265 | Sentence | denotes | In the more recent revision of the Chinese Diagnosis and Treatment Program, 6th Edition, the term “clinical diagnosis” was removed and replaced with “etiological diagnosis” (Organization, 2020a). |
| T239 | 1266-1530 | Sentence | denotes | According to the recent revision, it is imperative that an etiological diagnosis of COVID‐19 is made at first, which can then be complemented by a positive real‐time RT‐PCR assay for SARS‐CoV‐2, which is duly performed on the sputum or blood sample of the patient. |
| T240 | 1531-1701 | Sentence | denotes | After the final diagnosis is made, confirmed patients are categorized into mild, moderate, severe, and critical types, based on the severity of disease (Zu et al., 2020). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T76 | 219-228 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T77 | 796-805 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 716 | 199-207 | Disease | denotes | COVID‐19 | MESH:C000657245 |
| 717 | 219-228 | Disease | denotes | pneumonia | MESH:D011014 |
| 727 | 422-429 | Species | denotes | patient | Tax:9606 |
| 728 | 610-617 | Species | denotes | patient | Tax:9606 |
| 729 | 1039-1046 | Species | denotes | patient | Tax:9606 |
| 730 | 1449-1459 | Species | denotes | SARS‐CoV‐2 | Tax:2697049 |
| 731 | 1522-1529 | Species | denotes | patient | Tax:9606 |
| 732 | 1576-1584 | Species | denotes | patients | Tax:9606 |
| 733 | 790-805 | Disease | denotes | viral pneumonia | |
| 734 | 874-882 | Disease | denotes | COVID‐19 | MESH:C000657245 |
| 735 | 1350-1358 | Disease | denotes | COVID‐19 | MESH:C000657245 |