PMC:7253482 / 9504-9872 JSONTXT

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{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T59","span":{"begin":29,"end":37},"obj":"Body_part"},{"id":"T60","span":{"begin":299,"end":303},"obj":"Body_part"},{"id":"T61","span":{"begin":313,"end":320},"obj":"Body_part"}],"attributes":[{"id":"A59","pred":"fma_id","subj":"T59","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A60","pred":"fma_id","subj":"T60","obj":"http://purl.org/sig/ont/fma/fma7154"},{"id":"A61","pred":"fma_id","subj":"T61","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T3","span":{"begin":299,"end":303},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000033"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T35","span":{"begin":22,"end":26},"obj":"Disease"}],"attributes":[{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T57","span":{"begin":200,"end":201},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T58","span":{"begin":299,"end":303},"obj":"http://purl.obolibrary.org/obo/UBERON_0000033"},{"id":"T59","span":{"begin":299,"end":303},"obj":"http://www.ebi.ac.uk/efo/EFO_0000964"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T100","span":{"begin":29,"end":37},"obj":"Chemical"},{"id":"T101","span":{"begin":43,"end":45},"obj":"Chemical"},{"id":"T102","span":{"begin":241,"end":248},"obj":"Chemical"},{"id":"T103","span":{"begin":313,"end":320},"obj":"Chemical"},{"id":"T104","span":{"begin":336,"end":343},"obj":"Chemical"}],"attributes":[{"id":"A100","pred":"chebi_id","subj":"T100","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A101","pred":"chebi_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/CHEBI_141439"},{"id":"A102","pred":"chebi_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A103","pred":"chebi_id","subj":"T103","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A104","pred":"chebi_id","subj":"T104","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

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trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T59","span":{"begin":29,"end":37},"obj":"Body_part"},{"id":"T60","span":{"begin":299,"end":303},"obj":"Body_part"},{"id":"T61","span":{"begin":313,"end":320},"obj":"Body_part"}],"attributes":[{"id":"A59","pred":"fma_id","subj":"T59","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A60","pred":"fma_id","subj":"T60","obj":"http://purl.org/sig/ont/fma/fma7154"},{"id":"A61","pred":"fma_id","subj":"T61","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T80","span":{"begin":29,"end":37},"obj":"Chemical"},{"id":"T81","span":{"begin":241,"end":248},"obj":"Chemical"},{"id":"T82","span":{"begin":313,"end":320},"obj":"Chemical"},{"id":"T83","span":{"begin":336,"end":343},"obj":"Chemical"}],"attributes":[{"id":"A80","pred":"chebi_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A81","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"},{"id":"A82","pred":"chebi_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A83","pred":"chebi_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-PD-NCBITaxon","denotations":[{"id":"T63","span":{"begin":13,"end":17},"obj":"Species"},{"id":"T64","span":{"begin":22,"end":26},"obj":"Species"},{"id":"T65","span":{"begin":252,"end":256},"obj":"Species"}],"attributes":[{"id":"A63","pred":"ncbi_taxonomy_id","subj":"T63","obj":"NCBItxid:1335626"},{"id":"A64","pred":"ncbi_taxonomy_id","subj":"T64","obj":"NCBItxid:694009"},{"id":"A65","pred":"ncbi_taxonomy_id","subj":"T65","obj":"NCBItxid:1335626"}],"namespaces":[{"prefix":"NCBItxid","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-sentences","denotations":[{"id":"T55","span":{"begin":47,"end":203},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-PD-UBERON","denotations":[{"id":"T3","span":{"begin":299,"end":303},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000033"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T32","span":{"begin":22,"end":26},"obj":"Disease"}],"attributes":[{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-Pubtator","denotations":[{"id":"481","span":{"begin":13,"end":17},"obj":"Disease"},{"id":"453","span":{"begin":119,"end":130},"obj":"Species"},{"id":"463","span":{"begin":170,"end":176},"obj":"Chemical"},{"id":"464","span":{"begin":223,"end":235},"obj":"Chemical"},{"id":"465","span":{"begin":241,"end":248},"obj":"Chemical"},{"id":"482","span":{"begin":252,"end":256},"obj":"Disease"},{"id":"466","span":{"begin":336,"end":343},"obj":"Chemical"},{"id":"467","span":{"begin":347,"end":353},"obj":"Chemical"},{"id":"468","span":{"begin":355,"end":361},"obj":"Chemical"}],"attributes":[{"id":"A453","pred":"pubann:denotes","subj":"453","obj":"Tax:11118"},{"id":"A481","pred":"pubann:denotes","subj":"481","obj":"MESH:D018352"},{"id":"A482","pred":"pubann:denotes","subj":"482","obj":"MESH:D018352"},{"id":"A465","pred":"pubann:denotes","subj":"465","obj":"MESH:D011134"},{"id":"A466","pred":"pubann:denotes","subj":"466","obj":"MESH:D011134"},{"id":"A463","pred":"pubann:denotes","subj":"463","obj":"MESH:D011134"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-UniProt","denotations":[{"id":"T2653","span":{"begin":27,"end":37},"obj":"Protein"},{"id":"T2686","span":{"begin":311,"end":320},"obj":"Protein"}],"attributes":[{"id":"A2653","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9UIP0"},{"id":"A2654","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9UIN9"},{"id":"A2655","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9UIN8"},{"id":"A2656","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9UIN7"},{"id":"A2657","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9UIN6"},{"id":"A2658","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9UBH8"},{"id":"A2659","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NRH8"},{"id":"A2660","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NRH7"},{"id":"A2661","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NRH6"},{"id":"A2662","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NRH5"},{"id":"A2663","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NRH4"},{"id":"A2664","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NPG5"},{"id":"A2665","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NPE0"},{"id":"A2666","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q9NP52"},{"id":"A2667","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q95IF9"},{"id":"A2668","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q8N5P3"},{"id":"A2669","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q8IZU6"},{"id":"A2670","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q8IZU5"},{"id":"A2671","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q8IZU4"},{"id":"A2672","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q86Z04"},{"id":"A2673","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q7YR44"},{"id":"A2674","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q7LA71"},{"id":"A2675","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q7LA70"},{"id":"A2676","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q5STD2"},{"id":"A2677","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q5SQ85"},{"id":"A2678","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q1XI16"},{"id":"A2679","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q1XI12"},{"id":"A2680","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/Q15517"},{"id":"A2681","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/O43509"},{"id":"A2682","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/O19084"},{"id":"A2683","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/B0UYZ7"},{"id":"A2684","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/B0S7V2"},{"id":"A2685","pred":"uniprot_id","subj":"T2653","obj":"https://www.uniprot.org/uniprot/A5A6L9"},{"id":"A2686","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9UIP0"},{"id":"A2687","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9UIN9"},{"id":"A2688","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9UIN8"},{"id":"A2689","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9UIN7"},{"id":"A2690","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9UIN6"},{"id":"A2691","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9UBH8"},{"id":"A2692","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NRH8"},{"id":"A2693","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NRH7"},{"id":"A2694","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NRH6"},{"id":"A2695","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NRH5"},{"id":"A2696","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NRH4"},{"id":"A2697","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NPG5"},{"id":"A2698","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NPE0"},{"id":"A2699","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q9NP52"},{"id":"A2700","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q95IF9"},{"id":"A2701","pred":"uniprot_id","subj":"T2686","obj":"https://www.uniprot.org/uniprot/Q8N5P3"},{"id":"A2702","pred":"uniprot_id","subj":"T2686","obj":"ht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trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sample-PD-MAT","denotations":[{"id":"T1","span":{"begin":299,"end":303},"obj":"http://purl.obolibrary.org/obo/MAT_0000294"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}

{"project":"LitCovid-sentences","denotations":[{"id":"T55","span":{"begin":47,"end":203},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"the trimeric MERS and SARS S proteins (PDB ID: 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b). This revealed that oligomannose-type glycans on MERS S co-localize to specific clusters on the head of the S protein, consisting of glycans at Asn155, Asn166, and A"}