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PMC:7253482 / 9504-9872 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
453 119-130 Species denotes coronavirus Tax:11118
463 170-176 Chemical denotes glycan MESH:D011134
464 223-235 Chemical denotes oligomannose
465 241-248 Chemical denotes glycans MESH:D011134
466 336-343 Chemical denotes glycans MESH:D011134
467 347-353 Chemical denotes Asn155
468 355-361 Chemical denotes Asn166
481 13-17 Disease denotes MERS MESH:D018352
482 252-256 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T59 29-37 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T60 299-303 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T61 313-320 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 299-303 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 22-26 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T57 200-201 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T58 299-303 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T59 299-303 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T100 29-37 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T101 43-45 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T102 241-248 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T103 313-320 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T104 336-343 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T74888 0-3 DT denotes the
T85424 4-12 JJ denotes trimeric
T52754 13-17 NNS denotes MERS
T31179 18-21 CC denotes and
T61603 22-26 NNP denotes SARS
T11525 27-28 NN denotes S
T81925 29-37 NNS denotes proteins
T15094 38-39 -LRB- denotes (
T17734 39-42 NN denotes PDB
T49127 43-45 NN denotes ID
T41188 45-46 -COLON- denotes :
T82842 47-51 NN denotes 5X59
T94035 52-55 CC denotes and
T4129 56-60 NN denotes 5X58
T93804 60-61 -COMMA- denotes ,
T25861 62-74 RB denotes respectively
T44190 74-75 -RRB- denotes )
T83072 75-76 -COMMA- denotes ,
T56951 77-79 PRP denotes we
T84875 80-89 VBD denotes generated
T16354 90-96 NNS denotes models
T90159 97-99 IN denotes of
T64487 100-105 RB denotes fully
T51670 106-118 VBN denotes glycosylated
T11954 119-130 NN denotes coronavirus
T96423 131-137 NNS denotes spikes
T16192 138-143 VBG denotes using
T41991 144-158 RB denotes experimentally
T34640 159-169 VBN denotes determined
T73736 170-176 NN denotes glycan
T93669 177-189 NNS denotes compositions
T17443 190-191 -LRB- denotes (
T79807 191-198 NN denotes Fig. 3a
T84889 198-199 -COMMA- denotes ,
T56236 200-201 NN denotes b
T87991 201-202 -RRB- denotes )
T91445 204-208 DT denotes This
T32785 209-217 VBD denotes revealed
T90326 218-222 IN denotes that
T49774 223-240 JJ denotes oligomannose-type
T77922 241-248 NNS denotes glycans
T26521 249-251 IN denotes on
T6952 252-256 NNS denotes MERS
T82084 257-258 NN denotes S
T36749 259-270 VBP denotes co-localize
T66900 271-273 TO denotes to
T31749 274-282 JJ denotes specific
T40780 283-291 NNS denotes clusters
T42499 292-294 IN denotes on
T28913 295-298 DT denotes the
T99242 299-303 NN denotes head
T67844 304-306 IN denotes of
T51016 307-310 DT denotes the
T78718 311-312 NN denotes S
T82870 313-320 NN denotes protein
T5951 320-321 -COMMA- denotes ,
T72350 322-332 VBG denotes consisting
T71605 333-335 IN denotes of
T54609 336-343 NNS denotes glycans
T31759 344-346 IN denotes at
T18955 347-353 NN denotes Asn155
T13208 353-354 -COMMA- denotes ,
T79227 355-361 NN denotes Asn166
T49578 361-362 -COMMA- denotes ,
T66915 363-366 CC denotes and
R4839 T52754 T74888 arg1Of MERS,the
R12493 T52754 T85424 arg1Of MERS,trimeric
R15384 T81925 T31179 arg2Of proteins,and
R40953 T81925 T61603 arg1Of proteins,SARS
R75547 T81925 T11525 arg1Of proteins,S
R30633 T81925 T15094 arg1Of proteins,(
R92684 T49127 T15094 arg2Of ID,(
R78471 T41188 T15094 arg3Of :,(
R19229 T49127 T17734 arg1Of ID,PDB
R17784 T82842 T94035 arg1Of 5X59,and
R51304 T4129 T94035 arg2Of 5X58,and
R60505 T94035 T93804 arg1Of and,","
R71719 T94035 T25861 arg1Of and,respectively
R28786 T94035 T44190 arg1Of and,)
R15227 T84875 T83072 arg1Of generated,","
R22404 T56951 T84875 arg1Of we,generated
R44490 T94035 T84875 arg2Of and,generated
R83267 T16354 T84875 arg3Of models,generated
R81187 T16354 T90159 arg1Of models,of
R74540 T96423 T90159 arg2Of spikes,of
R95498 T51670 T64487 arg1Of glycosylated,fully
R50879 T96423 T51670 arg1Of spikes,glycosylated
R61028 T96423 T11954 arg1Of spikes,coronavirus
R82776 T96423 T16192 arg1Of spikes,using
R97315 T93669 T16192 arg2Of compositions,using
R35680 T93669 T41991 arg1Of compositions,experimentally
R13361 T93669 T34640 arg2Of compositions,determined
R24868 T93669 T73736 arg1Of compositions,glycan
R37429 T93669 T17443 arg1Of compositions,(
R31060 T79807 T17443 arg2Of Fig. 3a,(
R17506 T87991 T17443 arg3Of ),(
R10524 T79807 T84889 arg1Of Fig. 3a,","
R66153 T56236 T84889 arg2Of b,","
R10349 T91445 T32785 arg1Of This,revealed
R21926 T36749 T32785 arg2Of co-localize,revealed
R19622 T36749 T90326 arg1Of co-localize,that
R31615 T77922 T49774 arg1Of glycans,oligomannose-type
R55949 T77922 T26521 arg1Of glycans,on
R87012 T82084 T26521 arg2Of S,on
R45016 T82084 T6952 arg1Of S,MERS
R31141 T77922 T36749 arg1Of glycans,co-localize
R23288 T36749 T66900 arg1Of co-localize,to
R65669 T40780 T66900 arg2Of clusters,to
R28008 T40780 T31749 arg1Of clusters,specific
R90105 T40780 T42499 arg1Of clusters,on
R17876 T99242 T42499 arg2Of head,on
R50668 T99242 T28913 arg1Of head,the
R59810 T99242 T67844 arg1Of head,of
R71622 T82870 T67844 arg2Of protein,of
R58277 T82870 T51016 arg1Of protein,the
R35082 T82870 T78718 arg1Of protein,S
R23230 T36749 T5951 arg1Of co-localize,","
R33056 T77922 T72350 arg1Of glycans,consisting
R24535 T36749 T72350 modOf co-localize,consisting
R96209 T72350 T71605 arg1Of consisting,of
R24690 T54609 T71605 arg2Of glycans,of
R71539 T54609 T31759 arg1Of glycans,at
R71285 T66915 T31759 arg2Of and,at
R10987 T18955 T13208 arg1Of Asn155,","
R35754 T79227 T13208 arg2Of Asn166,","
R58997 T66915 T49578 arg1Of and,","
R88211 T13208 T66915 arg1Of ",",and

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T59 29-37 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T60 299-303 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T61 313-320 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T80 29-37 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T81 241-248 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T82 313-320 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T83 336-343 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T63 13-17 Species denotes MERS NCBItxid:1335626
T64 22-26 Species denotes SARS NCBItxid:694009
T65 252-256 Species denotes MERS NCBItxid:1335626

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T55 47-203 Sentence denotes 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b).

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 299-303 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T32 22-26 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
481 13-17 Disease denotes MERS MESH:D018352
453 119-130 Species denotes coronavirus Tax:11118
463 170-176 Chemical denotes glycan MESH:D011134
464 223-235 Chemical denotes oligomannose
465 241-248 Chemical denotes glycans MESH:D011134
482 252-256 Disease denotes MERS MESH:D018352
466 336-343 Chemical denotes glycans MESH:D011134
467 347-353 Chemical denotes Asn155
468 355-361 Chemical denotes Asn166

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T2653 27-37 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T2686 311-320 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T1 299-303 http://purl.obolibrary.org/obo/MAT_0000294 denotes head

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T55 47-203 Sentence denotes 5X59 and 5X58, respectively), we generated models of fully glycosylated coronavirus spikes using experimentally determined glycan compositions (Fig. 3a, b).