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PMC:7253482 / 14484-14734 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
537 184-191 Chemical denotes glycans MESH:D011134

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T87 41-51 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T88 66-74 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T86 41-60 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino-acid residues
T87 41-60 http://purl.obolibrary.org/obo/PR_000036907 denotes amino-acid residues

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T164 21-28 Chemical denotes solvent http://purl.obolibrary.org/obo/CHEBI_46787
T165 41-60 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T166 41-46 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T167 47-51 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T168 66-74 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T169 184-191 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T39 228-232 http://purl.obolibrary.org/obo/IDO_0000531 denotes host
T40 233-249 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T65633 0-2 PRP denotes We
T71210 3-15 VBD denotes hypothesized
T65773 16-20 IN denotes that
T55109 21-39 JJ denotes solvent-accessible
T1585 39-40 -COMMA- denotes ,
T39672 41-51 JJ denotes amino-acid
T20594 52-60 NNS denotes residues
T55010 61-63 IN denotes on
T92344 64-65 NN denotes S
T27449 66-74 NNS denotes proteins
T7753 75-80 MD denotes would
T87805 81-83 VB denotes be
T76109 84-94 VBG denotes undergoing
T49022 95-101 JJR denotes higher
T38215 102-107 NNS denotes rates
T48007 108-110 IN denotes of
T86087 111-120 NNS denotes mutations
T52952 121-129 VBN denotes compared
T99241 130-134 IN denotes with
T30950 135-141 JJ denotes buried
T25052 142-150 NNS denotes residues
T46492 151-154 CC denotes and
T57528 155-162 NNS denotes regions
T50177 163-167 WDT denotes that
T46892 168-171 VBP denotes are
T25102 172-180 VBN denotes occluded
T44481 181-183 IN denotes by
T18790 184-191 NNS denotes glycans
T48178 191-192 -COMMA- denotes ,
T59110 193-198 WDT denotes which
T61432 199-202 VBP denotes are
T59632 203-209 JJ denotes unable
T87545 210-212 TO denotes to
T66630 213-215 VB denotes be
T30435 216-224 VBN denotes targeted
T87263 225-227 IN denotes by
T84547 228-232 NN denotes host
T42560 233-239 JJ denotes immune
T4934 240-249 NNS denotes responses
R61681 T65633 T71210 arg1Of We,hypothesized
R96091 T76109 T71210 arg2Of undergoing,hypothesized
R22162 T76109 T65773 arg1Of undergoing,that
R85221 T20594 T55109 arg1Of residues,solvent-accessible
R72861 T55109 T1585 arg1Of solvent-accessible,","
R77034 T39672 T1585 arg2Of amino-acid,","
R36891 T20594 T39672 arg1Of residues,amino-acid
R40189 T20594 T55010 arg1Of residues,on
R95749 T27449 T55010 arg2Of proteins,on
R96156 T27449 T92344 arg1Of proteins,S
R72203 T20594 T7753 arg1Of residues,would
R54302 T76109 T7753 arg2Of undergoing,would
R95941 T20594 T87805 arg1Of residues,be
R17994 T76109 T87805 arg2Of undergoing,be
R16092 T20594 T76109 arg1Of residues,undergoing
R25200 T38215 T76109 arg2Of rates,undergoing
R60609 T38215 T49022 arg1Of rates,higher
R64991 T38215 T48007 arg1Of rates,of
R81741 T86087 T48007 arg2Of mutations,of
R95788 T76109 T52952 arg1Of undergoing,compared
R82820 T99241 T52952 arg2Of with,compared
R28386 T46492 T99241 arg2Of and,with
R5522 T46492 T30950 arg1Of and,buried
R56973 T25052 T46492 arg1Of residues,and
R46016 T57528 T46492 arg2Of regions,and
R56933 T46492 T50177 arg1Of and,that
R91100 T46492 T46892 arg1Of and,are
R37081 T25102 T46892 arg2Of occluded,are
R26107 T18790 T25102 arg1Of glycans,occluded
R81060 T46492 T25102 arg2Of and,occluded
R80658 T18790 T44481 arg2Of glycans,by
R29286 T46492 T48178 arg1Of and,","
R31717 T46492 T59110 arg1Of and,which
R31827 T46492 T61432 arg1Of and,are
R49061 T59632 T61432 arg2Of unable,are
R61595 T46492 T59632 arg1Of and,unable
R96524 T30435 T59632 arg2Of targeted,unable
R23177 T30435 T87545 arg1Of targeted,to
R28264 T46492 T66630 arg1Of and,be
R73473 T30435 T66630 arg2Of targeted,be
R65049 T4934 T30435 arg1Of responses,targeted
R86135 T46492 T30435 arg2Of and,targeted
R84142 T4934 T87263 arg2Of responses,by
R84767 T4934 T84547 arg1Of responses,host
R30852 T4934 T42560 arg1Of responses,immune

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T86 41-51 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T87 66-74 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T122 41-60 Chemical denotes amino-acid residues http://purl.obolibrary.org/obo/CHEBI_33708
T123 66-74 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T124 184-191 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T87 0-250 Sentence denotes We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
537 184-191 Chemical denotes glycans MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T3670 64-74 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T35 233-249 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T32 233-249 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T36 233-249 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T87 0-250 Sentence denotes We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses.