PMC:7253482 / 14484-14734 JSONTXT

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    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"537","span":{"begin":184,"end":191},"obj":"Chemical"}],"attributes":[{"id":"A537","pred":"tao:has_database_id","subj":"537","obj":"MESH:D011134"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T87","span":{"begin":41,"end":51},"obj":"Body_part"},{"id":"T88","span":{"begin":66,"end":74},"obj":"Body_part"}],"attributes":[{"id":"A87","pred":"fma_id","subj":"T87","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A88","pred":"fma_id","subj":"T88","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T86","span":{"begin":41,"end":60},"obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"T87","span":{"begin":41,"end":60},"obj":"http://purl.obolibrary.org/obo/PR_000036907"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T164","span":{"begin":21,"end":28},"obj":"Chemical"},{"id":"T165","span":{"begin":41,"end":60},"obj":"Chemical"},{"id":"T166","span":{"begin":41,"end":46},"obj":"Chemical"},{"id":"T167","span":{"begin":47,"end":51},"obj":"Chemical"},{"id":"T168","span":{"begin":66,"end":74},"obj":"Chemical"},{"id":"T169","span":{"begin":184,"end":191},"obj":"Chemical"}],"attributes":[{"id":"A164","pred":"chebi_id","subj":"T164","obj":"http://purl.obolibrary.org/obo/CHEBI_46787"},{"id":"A165","pred":"chebi_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A166","pred":"chebi_id","subj":"T166","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A167","pred":"chebi_id","subj":"T167","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A168","pred":"chebi_id","subj":"T168","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A169","pred":"chebi_id","subj":"T169","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-PD-IDO

    {"project":"LitCovid-sample-PD-IDO","denotations":[{"id":"T39","span":{"begin":228,"end":232},"obj":"http://purl.obolibrary.org/obo/IDO_0000531"},{"id":"T40","span":{"begin":233,"end":249},"obj":"http://purl.obolibrary.org/obo/GO_0006955"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-Enju

    {"project":"LitCovid-sample-Enju","denotations":[{"id":"T65633","span":{"begin":0,"end":2},"obj":"PRP"},{"id":"T71210","span":{"begin":3,"end":15},"obj":"VBD"},{"id":"T65773","span":{"begin":16,"end":20},"obj":"IN"},{"id":"T55109","span":{"begin":21,"end":39},"obj":"JJ"},{"id":"T1585","span":{"begin":39,"end":40},"obj":"-COMMA-"},{"id":"T39672","span":{"begin":41,"end":51},"obj":"JJ"},{"id":"T20594","span":{"begin":52,"end":60},"obj":"NNS"},{"id":"T55010","span":{"begin":61,"end":63},"obj":"IN"},{"id":"T92344","span":{"begin":64,"end":65},"obj":"NN"},{"id":"T27449","span":{"begin":66,"end":74},"obj":"NNS"},{"id":"T7753","span":{"begin":75,"end":80},"obj":"MD"},{"id":"T87805","span":{"begin":81,"end":83},"obj":"VB"},{"id":"T76109","span":{"begin":84,"end":94},"obj":"VBG"},{"id":"T49022","span":{"begin":95,"end":101},"obj":"JJR"},{"id":"T38215","span":{"begin":102,"end":107},"obj":"NNS"},{"id":"T48007","span":{"begin":108,"end":110},"obj":"IN"},{"id":"T86087","span":{"begin":111,"end":120},"obj":"NNS"},{"id":"T52952","span":{"begin":121,"end":129},"obj":"VBN"},{"id":"T99241","span":{"begin":130,"end":134},"obj":"IN"},{"id":"T30950","span":{"begin":135,"end":141},"obj":"JJ"},{"id":"T25052","span":{"begin":142,"end":150},"obj":"NNS"},{"id":"T46492","span":{"begin":151,"end":154},"obj":"CC"},{"id":"T57528","span":{"begin":155,"end":162},"obj":"NNS"},{"id":"T50177","span":{"begin":163,"end":167},"obj":"WDT"},{"id":"T46892","span":{"begin":168,"end":171},"obj":"VBP"},{"id":"T25102","span":{"begin":172,"end":180},"obj":"VBN"},{"id":"T44481","span":{"begin":181,"end":183},"obj":"IN"},{"id":"T18790","span":{"begin":184,"end":191},"obj":"NNS"},{"id":"T48178","span":{"begin":191,"end":192},"obj":"-COMMA-"},{"id":"T59110","span":{"begin":193,"end":198},"obj":"WDT"},{"id":"T61432","span":{"begin":199,"end":202},"obj":"VBP"},{"id":"T59632","span":{"begin":203,"end":209},"obj":"JJ"},{"id":"T87545","span":{"begin":210,"end":212},"obj":"TO"},{"id":"T66630","span":{"begin":213,"end":215},"obj":"VB"},{"id":"T30435","span":{"begin":216,"end":224},"obj":"VBN"},{"id":"T87263","span":{"begin":225,"end":227},"obj":"IN"},{"id":"T84547","span":{"begin":228,"end":232},"obj":"NN"},{"id":"T42560","span":{"begin":233,"end":239},"obj":"JJ"},{"id":"T4934","span":{"begin":240,"end":249},"obj":"NNS"}],"relations":[{"id":"R61681","pred":"arg1Of","subj":"T65633","obj":"T71210"},{"id":"R96091","pred":"arg2Of","subj":"T76109","obj":"T71210"},{"id":"R22162","pred":"arg1Of","subj":"T76109","obj":"T65773"},{"id":"R85221","pred":"arg1Of","subj":"T20594","obj":"T55109"},{"id":"R72861","pred":"arg1Of","subj":"T55109","obj":"T1585"},{"id":"R77034","pred":"arg2Of","subj":"T39672","obj":"T1585"},{"id":"R36891","pred":"arg1Of","subj":"T20594","obj":"T39672"},{"id":"R40189","pred":"arg1Of","subj":"T20594","obj":"T55010"},{"id":"R95749","pred":"arg2Of","subj":"T27449","obj":"T55010"},{"id":"R96156","pred":"arg1Of","subj":"T27449","obj":"T92344"},{"id":"R72203","pred":"arg1Of","subj":"T20594","obj":"T7753"},{"id":"R54302","pred":"arg2Of","subj":"T76109","obj":"T7753"},{"id":"R95941","pred":"arg1Of","subj":"T20594","obj":"T87805"},{"id":"R17994","pred":"arg2Of","subj":"T76109","obj":"T87805"},{"id":"R16092","pred":"arg1Of","subj":"T20594","obj":"T76109"},{"id":"R25200","pred":"arg2Of","subj":"T38215","obj":"T76109"},{"id":"R60609","pred":"arg1Of","subj":"T38215","obj":"T49022"},{"id":"R64991","pred":"arg1Of","subj":"T38215","obj":"T48007"},{"id":"R81741","pred":"arg2Of","subj":"T86087","obj":"T48007"},{"id":"R95788","pred":"arg1Of","subj":"T76109","obj":"T52952"},{"id":"R82820","pred":"arg2Of","subj":"T99241","obj":"T52952"},{"id":"R28386","pred":"arg2Of","subj":"T46492","obj":"T99241"},{"id":"R5522","pred":"arg1Of","subj":"T46492","obj":"T30950"},{"id":"R56973","pred":"arg1Of","subj":"T25052","obj":"T46492"},{"id":"R46016","pred":"arg2Of","subj":"T57528","obj":"T46492"},{"id":"R56933","pred":"arg1Of","subj":"T46492","obj":"T50177"},{"id":"R91100","pred":"arg1Of","subj":"T46492","obj":"T46892"},{"id":"R37081","pred":"arg2Of","subj":"T25102","obj":"T46892"},{"id":"R26107","pred":"arg1Of","subj":"T18790","obj":"T25102"},{"id":"R81060","pred":"arg2Of","subj":"T46492","obj":"T25102"},{"id":"R80658","pred":"arg2Of","subj":"T18790","obj":"T44481"},{"id":"R29286","pred":"arg1Of","subj":"T46492","obj":"T48178"},{"id":"R31717","pred":"arg1Of","subj":"T46492","obj":"T59110"},{"id":"R31827","pred":"arg1Of","subj":"T46492","obj":"T61432"},{"id":"R49061","pred":"arg2Of","subj":"T59632","obj":"T61432"},{"id":"R61595","pred":"arg1Of","subj":"T46492","obj":"T59632"},{"id":"R96524","pred":"arg2Of","subj":"T30435","obj":"T59632"},{"id":"R23177","pred":"arg1Of","subj":"T30435","obj":"T87545"},{"id":"R28264","pred":"arg1Of","subj":"T46492","obj":"T66630"},{"id":"R73473","pred":"arg2Of","subj":"T30435","obj":"T66630"},{"id":"R65049","pred":"arg1Of","subj":"T4934","obj":"T30435"},{"id":"R86135","pred":"arg2Of","subj":"T46492","obj":"T30435"},{"id":"R84142","pred":"arg2Of","subj":"T4934","obj":"T87263"},{"id":"R84767","pred":"arg1Of","subj":"T4934","obj":"T84547"},{"id":"R30852","pred":"arg1Of","subj":"T4934","obj":"T42560"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-PD-FMA

    {"project":"LitCovid-sample-PD-FMA","denotations":[{"id":"T86","span":{"begin":41,"end":51},"obj":"Body_part"},{"id":"T87","span":{"begin":66,"end":74},"obj":"Body_part"}],"attributes":[{"id":"A86","pred":"fma_id","subj":"T86","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A87","pred":"fma_id","subj":"T87","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-CHEBI

    {"project":"LitCovid-sample-CHEBI","denotations":[{"id":"T122","span":{"begin":41,"end":60},"obj":"Chemical"},{"id":"T123","span":{"begin":66,"end":74},"obj":"Chemical"},{"id":"T124","span":{"begin":184,"end":191},"obj":"Chemical"}],"attributes":[{"id":"A122","pred":"chebi_id","subj":"T122","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A123","pred":"chebi_id","subj":"T123","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A124","pred":"chebi_id","subj":"T124","obj":"http://purl.obolibrary.org/obo/CHEBI_18154"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-sentences

    {"project":"LitCovid-sample-sentences","denotations":[{"id":"T87","span":{"begin":0,"end":250},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-Pubtator

    {"project":"LitCovid-sample-Pubtator","denotations":[{"id":"537","span":{"begin":184,"end":191},"obj":"Chemical"}],"attributes":[{"id":"A537","pred":"pubann:denotes","subj":"537","obj":"MESH:D011134"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-UniProt

    {"project":"LitCovid-sample-UniProt","denotations":[{"id":"T3670","span":{"begin":64,"end":74},"obj":"Protein"}],"attributes":[{"id":"A3670","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9UIP0"},{"id":"A3671","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9UIN9"},{"id":"A3672","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9UIN8"},{"id":"A3673","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9UIN7"},{"id":"A3674","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9UIN6"},{"id":"A3675","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9UBH8"},{"id":"A3676","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NRH8"},{"id":"A3677","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NRH7"},{"id":"A3678","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NRH6"},{"id":"A3679","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NRH5"},{"id":"A3680","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NRH4"},{"id":"A3681","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NPG5"},{"id":"A3682","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NPE0"},{"id":"A3683","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q9NP52"},{"id":"A3684","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q95IF9"},{"id":"A3685","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q8N5P3"},{"id":"A3686","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q8IZU6"},{"id":"A3687","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q8IZU5"},{"id":"A3688","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q8IZU4"},{"id":"A3689","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q86Z04"},{"id":"A3690","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q7YR44"},{"id":"A3691","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q7LA71"},{"id":"A3692","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q7LA70"},{"id":"A3693","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q5STD2"},{"id":"A3694","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q5SQ85"},{"id":"A3695","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q1XI16"},{"id":"A3696","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q1XI12"},{"id":"A3697","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/Q15517"},{"id":"A3698","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/O43509"},{"id":"A3699","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/O19084"},{"id":"A3700","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/B0UYZ7"},{"id":"A3701","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/B0S7V2"},{"id":"A3702","pred":"uniprot_id","subj":"T3670","obj":"https://www.uniprot.org/uniprot/A5A6L9"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-PD-GO-BP-0

    {"project":"LitCovid-sample-PD-GO-BP-0","denotations":[{"id":"T35","span":{"begin":233,"end":249},"obj":"http://purl.obolibrary.org/obo/GO_0006955"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sample-GO-BP

    {"project":"LitCovid-sample-GO-BP","denotations":[{"id":"T32","span":{"begin":233,"end":249},"obj":"http://purl.obolibrary.org/obo/GO_0006955"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-PD-GO-BP

    {"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T36","span":{"begin":233,"end":249},"obj":"http://purl.obolibrary.org/obo/GO_0006955"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T87","span":{"begin":0,"end":250},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We hypothesized that solvent-accessible, amino-acid residues on S proteins would be undergoing higher rates of mutations compared with buried residues and regions that are occluded by glycans, which are unable to be targeted by host immune responses."}