PMC:7247521 / 10839-11383 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7247521","sourcedb":"PMC","sourceid":"7247521","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7247521","text":"Specifically, the 10 nonstructural and 2 structural proteins of 2019-nCov were collected (Mpro, PLpro, nsp12 [RdRp with RNA], nsp12 [RdRp without RNA], nsp13 [Helicase ADP site], nsp13 [Helicase NCB site], nsp14 [ExoN], nsp14 [N7-MTase], nsp15 [endoribonuclease], nsp16 [2′-O-MTase], N protein NCB site and E protein [ion channel]); and the corresponding Protein Data Bank (PDB)codes were 6LU7, 4OW0, 3H5Y (with RNA), 3H5Y (without RNA), 6JYT (ADP site), 6JYT (NCB site), 5C8S (ExoN),5C8S (N7-MTase), 2RHB, 2XYR, 4KYJ, and 5 × 29, respectively.","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"176","span":{"begin":90,"end":94},"obj":"Gene"},{"id":"177","span":{"begin":110,"end":114},"obj":"Gene"},{"id":"178","span":{"begin":133,"end":137},"obj":"Gene"},{"id":"179","span":{"begin":159,"end":167},"obj":"Gene"},{"id":"180","span":{"begin":186,"end":194},"obj":"Gene"},{"id":"181","span":{"begin":96,"end":101},"obj":"Gene"},{"id":"183","span":{"begin":64,"end":73},"obj":"Species"}],"attributes":[{"id":"A176","pred":"tao:has_database_id","subj":"176","obj":"Gene:8673700"},{"id":"A177","pred":"tao:has_database_id","subj":"177","obj":"Gene:43740578"},{"id":"A178","pred":"tao:has_database_id","subj":"178","obj":"Gene:43740578"},{"id":"A179","pred":"tao:has_database_id","subj":"179","obj":"Gene:164045"},{"id":"A180","pred":"tao:has_database_id","subj":"180","obj":"Gene:164045"},{"id":"A181","pred":"tao:has_database_id","subj":"181","obj":"Gene:43740578"},{"id":"A183","pred":"tao:has_database_id","subj":"183","obj":"Tax:2697049"},{"subj":"176","pred":"source","obj":"LitCovid-PubTator"},{"subj":"177","pred":"source","obj":"LitCovid-PubTator"},{"subj":"178","pred":"source","obj":"LitCovid-PubTator"},{"subj":"179","pred":"source","obj":"LitCovid-PubTator"},{"subj":"180","pred":"source","obj":"LitCovid-PubTator"},{"subj":"181","pred":"source","obj":"LitCovid-PubTator"},{"subj":"183","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T118","span":{"begin":64,"end":73},"obj":"SP_7"},{"id":"T119","span":{"begin":103,"end":108},"obj":"PR:000000125"},{"id":"T120","span":{"begin":126,"end":131},"obj":"PR:000000125"},{"id":"T121","span":{"begin":152,"end":157},"obj":"PR:000000125"},{"id":"T122","span":{"begin":168,"end":176},"obj":"SO:0000346"},{"id":"T123","span":{"begin":179,"end":184},"obj":"PR:000000125"},{"id":"T124","span":{"begin":206,"end":211},"obj":"PR:000000125"},{"id":"T125","span":{"begin":220,"end":225},"obj":"PR:000000125"},{"id":"T126","span":{"begin":238,"end":243},"obj":"PR:000000125"},{"id":"T127","span":{"begin":264,"end":269},"obj":"PR:000000125"},{"id":"T128","span":{"begin":284,"end":293},"obj":"PG_4"},{"id":"T129","span":{"begin":307,"end":316},"obj":"PG_2"},{"id":"T130","span":{"begin":318,"end":321},"obj":"CHEBI:24870;CHEBI:24870"},{"id":"T131","span":{"begin":448,"end":452},"obj":"SO:0000346"}],"attributes":[{"subj":"T118","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T119","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T120","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T121","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T122","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T123","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T124","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T125","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T126","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T127","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T128","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T129","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T130","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T131","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T19","span":{"begin":52,"end":60},"obj":"Body_part"},{"id":"T20","span":{"begin":120,"end":123},"obj":"Body_part"},{"id":"T21","span":{"begin":146,"end":149},"obj":"Body_part"},{"id":"T22","span":{"begin":213,"end":217},"obj":"Body_part"},{"id":"T23","span":{"begin":286,"end":293},"obj":"Body_part"},{"id":"T24","span":{"begin":309,"end":316},"obj":"Body_part"},{"id":"T25","span":{"begin":355,"end":362},"obj":"Body_part"},{"id":"T26","span":{"begin":412,"end":415},"obj":"Body_part"},{"id":"T27","span":{"begin":432,"end":435},"obj":"Body_part"},{"id":"T28","span":{"begin":478,"end":482},"obj":"Body_part"}],"attributes":[{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma84120"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A26","pred":"fma_id","subj":"T26","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A27","pred":"fma_id","subj":"T27","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A28","pred":"fma_id","subj":"T28","obj":"http://purl.org/sig/ont/fma/fma84120"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T49","span":{"begin":52,"end":60},"obj":"Chemical"},{"id":"T50","span":{"begin":168,"end":171},"obj":"Chemical"},{"id":"T53","span":{"begin":286,"end":293},"obj":"Chemical"},{"id":"T54","span":{"begin":309,"end":316},"obj":"Chemical"},{"id":"T55","span":{"begin":318,"end":321},"obj":"Chemical"},{"id":"T56","span":{"begin":355,"end":362},"obj":"Chemical"},{"id":"T57","span":{"begin":444,"end":447},"obj":"Chemical"}],"attributes":[{"id":"A49","pred":"chebi_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A50","pred":"chebi_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/CHEBI_16761"},{"id":"A51","pred":"chebi_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/CHEBI_456216"},{"id":"A52","pred":"chebi_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/CHEBI_73342"},{"id":"A53","pred":"chebi_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A55","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_24870"},{"id":"A56","pred":"chebi_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A57","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_16761"},{"id":"A58","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_456216"},{"id":"A59","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_73342"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T55","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T56","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T57","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T29","span":{"begin":318,"end":329},"obj":"http://purl.obolibrary.org/obo/GO_0022831"}],"attributes":[{"subj":"T29","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T68","span":{"begin":0,"end":544},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T68","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#9a93ec","default":true},{"id":"LitCovid-PMC-OGER-BB","color":"#a5ec93"},{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93bf"},{"id":"LitCovid-PD-CHEBI","color":"#93d9ec"},{"id":"LitCovid-PD-GO-BP","color":"#ece593"},{"id":"LitCovid-sentences","color":"#ca93ec"}]}]}}