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PMC:7247521 / 10839-11383 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
176 90-94 Gene denotes Mpro Gene:8673700
177 110-114 Gene denotes RdRp Gene:43740578
178 133-137 Gene denotes RdRp Gene:43740578
179 159-167 Gene denotes Helicase Gene:164045
180 186-194 Gene denotes Helicase Gene:164045
181 96-101 Gene denotes PLpro Gene:43740578
183 64-73 Species denotes 2019-nCov Tax:2697049

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T118 64-73 SP_7 denotes 2019-nCov
T119 103-108 PR:000000125 denotes nsp12
T120 126-131 PR:000000125 denotes nsp12
T121 152-157 PR:000000125 denotes nsp13
T122 168-176 SO:0000346 denotes ADP site
T123 179-184 PR:000000125 denotes nsp13
T124 206-211 PR:000000125 denotes nsp14
T125 220-225 PR:000000125 denotes nsp14
T126 238-243 PR:000000125 denotes nsp15
T127 264-269 PR:000000125 denotes nsp16
T128 284-293 PG_4 denotes N protein
T129 307-316 PG_2 denotes E protein
T130 318-321 CHEBI:24870;CHEBI:24870 denotes ion
T131 448-452 SO:0000346 denotes site

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T19 52-60 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T20 120-123 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T21 146-149 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T22 213-217 Body_part denotes ExoN http://purl.org/sig/ont/fma/fma84120
T23 286-293 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T24 309-316 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T25 355-362 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T26 412-415 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T27 432-435 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T28 478-482 Body_part denotes ExoN http://purl.org/sig/ont/fma/fma84120

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T49 52-60 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T50 168-171 Chemical denotes ADP http://purl.obolibrary.org/obo/CHEBI_16761|http://purl.obolibrary.org/obo/CHEBI_456216|http://purl.obolibrary.org/obo/CHEBI_73342
T53 286-293 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T54 309-316 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T55 318-321 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T56 355-362 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T57 444-447 Chemical denotes ADP http://purl.obolibrary.org/obo/CHEBI_16761|http://purl.obolibrary.org/obo/CHEBI_456216|http://purl.obolibrary.org/obo/CHEBI_73342

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T29 318-329 http://purl.obolibrary.org/obo/GO_0022831 denotes ion channel

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T68 0-544 Sentence denotes Specifically, the 10 nonstructural and 2 structural proteins of 2019-nCov were collected (Mpro, PLpro, nsp12 [RdRp with RNA], nsp12 [RdRp without RNA], nsp13 [Helicase ADP site], nsp13 [Helicase NCB site], nsp14 [ExoN], nsp14 [N7-MTase], nsp15 [endoribonuclease], nsp16 [2′-O-MTase], N protein NCB site and E protein [ion channel]); and the corresponding Protein Data Bank (PDB)codes were 6LU7, 4OW0, 3H5Y (with RNA), 3H5Y (without RNA), 6JYT (ADP site), 6JYT (NCB site), 5C8S (ExoN),5C8S (N7-MTase), 2RHB, 2XYR, 4KYJ, and 5 × 29, respectively.