PMC:7239617 / 1124-1927
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 55 | 49-57 | Species | denotes | patients | Tax:9606 |
| 56 | 150-158 | Species | denotes | patients | Tax:9606 |
| 57 | 178-186 | Species | denotes | patients | Tax:9606 |
| 58 | 649-670 | Species | denotes | Aspergillus fumigatus | Tax:746128 |
| 59 | 474-485 | Species | denotes | Aspergillus | Tax:746128 |
| 60 | 586-597 | Species | denotes | Aspergillus | Tax:746128 |
| 61 | 324-334 | Chemical | denotes | β-D-glucan | |
| 62 | 684-686 | Chemical | denotes | BA | |
| 66 | 135-149 | Disease | denotes | critically ill | MESH:D016638 |
| 67 | 164-172 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T2 | 318-323 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T3 | 386-391 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T4 | 691-696 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T5 | 761-766 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T6 | 796-801 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 318-323 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T3 | 386-391 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T4 | 691-696 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T5 | 761-766 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T6 | 796-801 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T7 | 123-126 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T8 | 290-293 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T9 | 452-455 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T10 | 615-625 | Phenotype | denotes | aspiration | http://purl.obolibrary.org/obo/HP_0002835 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T13 | 39-48 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T14 | 164-172 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T15 | 269-278 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 18-21 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T5 | 787-789 | http://purl.obolibrary.org/obo/CLO_0008426 | denotes | pg |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T11 | 123-126 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T13 | 225-228 | Chemical | denotes | MSG | http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243 |
| T15 | 290-293 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T17 | 328-334 | Chemical | denotes | glucan | http://purl.obolibrary.org/obo/CHEBI_37163 |
| T18 | 452-455 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T20 | 509-512 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T21 | 679-682 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T22 | 699-712 | Chemical | denotes | galactomannan | http://purl.obolibrary.org/obo/CHEBI_27680 |
| T23 | 727-730 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T24 | 733-746 | Chemical | denotes | galactomannan | http://purl.obolibrary.org/obo/CHEBI_27680 |
| T25 | 776-782 | Chemical | denotes | glucan | http://purl.obolibrary.org/obo/CHEBI_37163 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T2 | 699-712 | GlycoEpitope | denotes | galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
| T3 | 733-746 | GlycoEpitope | denotes | galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 0-173 | Sentence | denotes | Parallelling what has been reported in influenza patients, we designed this prospective observational study to investigate IPA risk in critically ill patients with COVID-19. |
| T4 | 174-442 | Sentence | denotes | The patients were classified by means of the EORTC-MSG criteria5 (if immunocompromised) or the influenza-associated IPA criteria4 combined with serum β-D-glucan and quantitative real-time PCR (qPCR)7 done in the serum or pulmonary specimens (if non-immunocompromised). |
| T5 | 443-803 | Sentence | denotes | Putative IPA was considered if Aspergillus spp were identified in BAL culture; or if two of the following conditions were met (ie, presence of Aspergillus spp in bronchial aspiration [BA] culture; positive Aspergillus fumigatus qPCR in BAL, BA, or serum;8 galactomannan index >0·8 in BAL;5 galactomannan index >0·5 in serum; and β-D-glucan >80 pg/mL in serum). |