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PMC:7219429 / 21534-22690 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T127 93-100 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T128 113-124 Body_part denotes Ganglioside http://purl.org/sig/ont/fma/fma82816
T129 236-241 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T130 286-293 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T131 325-337 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T132 386-397 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T133 430-437 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T134 468-480 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T135 595-606 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T136 777-784 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T137 821-832 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T138 928-935 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T82 76-84 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 269-277 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 413-421 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T85 760-768 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T86 911-919 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T209 56-57 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T210 110-111 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T211 176-177 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T212 561-566 http://purl.obolibrary.org/obo/CLO_0050605 denotes (d) 4
T213 593-594 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T396 7-10 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T397 59-62 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T398 93-100 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T399 113-124 Chemical denotes Ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T400 159-162 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T403 163-172 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T404 236-241 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T405 286-293 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T406 317-320 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T407 325-337 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T408 373-376 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T409 386-397 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T410 430-437 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T411 468-480 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T412 574-583 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T413 595-606 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T414 619-622 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T417 623-631 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T418 657-666 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T419 717-727 Chemical denotes saccharide http://purl.obolibrary.org/obo/CHEBI_16646
T420 777-784 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T421 802-805 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T424 821-832 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T425 928-935 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T426 953-956 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T427 1079-1082 Chemical denotes ATM http://purl.obolibrary.org/obo/CHEBI_2955
T428 1087-1090 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T24 159-162 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T25 619-622 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T26 802-805 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T27 1087-1090 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T162 302-445 Sentence denotes Note that both ATM and gangliosides share the same binding region. (c) ATM prevents ganglioside binding to the SARS-CoV-2 spike protein trimer.
T163 446-613 Sentence denotes CLQ-OH, once bound to gangliosides (blue and orange surfaces), also prevents any interaction with the viral spike. (d) 4 CLQ-OH molecules bound to a ganglioside dimer.
T164 614-806 Sentence denotes Each GM1 molecule is blocked by two CLQ-OH molecules (blue and orange surfaces), which wrap around the saccharide part. (e) Detail of the 134-138 SARS-CoV-2 spike protein stretch bound to GM1.
T165 807-957 Sentence denotes Note that the ganglioside interacts with Q-134 and F-135, but not with D-138. (f) Detail of the 134-138 SARS-CoV-2 spike protein stretch bound to ATM.
T166 958-1035 Sentence denotes In this case, the binding site includes D-138 in addition to Q-134 and F-135.
T167 1036-1156 Sentence denotes Note that N-137, which interacts with both ATM and GM1, is not visible in these representations as it is located behind.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
567 922-927 Gene denotes spike Gene:43740568
568 771-776 Gene denotes spike Gene:43740568
569 554-559 Gene denotes spike Gene:43740568
570 424-429 Gene denotes spike Gene:43740568
571 280-285 Gene denotes spike Gene:43740568
572 87-92 Gene denotes spike Gene:43740568
573 76-86 Species denotes SARS-CoV-2 Tax:2697049
574 269-279 Species denotes SARS-CoV-2 Tax:2697049
575 413-423 Species denotes SARS-CoV-2 Tax:2697049
576 760-770 Species denotes SARS-CoV-2 Tax:2697049
577 911-921 Species denotes SARS-CoV-2 Tax:2697049
578 0-6 Chemical denotes CLQ-OH
579 113-124 Chemical denotes Ganglioside MESH:D005732
580 159-162 Chemical denotes GM1 MESH:D005677
581 236-241 Chemical denotes lipid MESH:D008055
582 325-337 Chemical denotes gangliosides MESH:D005732
583 386-397 Chemical denotes ganglioside MESH:D005732
584 446-452 Chemical denotes CLQ-OH
585 468-480 Chemical denotes gangliosides MESH:D005732
586 567-573 Chemical denotes CLQ-OH
587 595-606 Chemical denotes ganglioside MESH:D005732
588 619-622 Chemical denotes GM1 MESH:D005677
589 650-656 Chemical denotes CLQ-OH
590 802-805 Chemical denotes GM1 MESH:D005677
591 821-832 Chemical denotes ganglioside MESH:D005732
592 998-1003 Chemical denotes D-138
593 1019-1024 Chemical denotes Q-134
594 1046-1051 Chemical denotes N-137 MESH:C022084
595 1087-1090 Chemical denotes GM1 MESH:D005677