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PMC:7212965 / 94670-96020 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T234 434-449 Body_part denotes Digestive tract http://purl.org/sig/ont/fma/fma317863

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T193 434-449 Body_part denotes Digestive tract http://purl.obolibrary.org/obo/UBERON_0001555

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T449 50-58 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T450 168-176 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T451 304-312 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T452 335-343 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T453 424-432 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T454 540-548 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T455 1144-1152 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T751 241-246 http://purl.obolibrary.org/obo/CLO_0007225 denotes label
T752 321-323 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T753 346-348 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T754 374-379 http://purl.obolibrary.org/obo/CLO_0007225 denotes label
T755 434-449 http://purl.obolibrary.org/obo/UBERON_0001555 denotes Digestive tract
T756 464-467 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T757 482-485 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T758 1243-1244 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T267 118-120 Chemical denotes GI http://purl.obolibrary.org/obo/CHEBI_73907
T268 241-246 Chemical denotes label http://purl.obolibrary.org/obo/CHEBI_35209
T269 262-273 Chemical denotes favipiravir http://purl.obolibrary.org/obo/CHEBI_134722
T270 278-287 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T271 289-298 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T272 313-315 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T273 316-318 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T274 374-379 Chemical denotes label http://purl.obolibrary.org/obo/CHEBI_35209
T275 388-399 Chemical denotes favipiravir http://purl.obolibrary.org/obo/CHEBI_134722
T276 403-410 Chemical denotes arbidol http://purl.obolibrary.org/obo/CHEBI_134730
T277 477-479 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T278 494-503 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T279 504-513 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T280 687-692 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T281 712-717 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T282 736-741 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T283 761-766 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T284 785-790 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T285 811-816 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T286 826-829 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T287 869-874 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T288 927-932 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T289 1068-1079 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T290 1225-1227 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T443 137-152 Phenotype denotes Nausea/vomiting http://purl.obolibrary.org/obo/HP_0002017
T444 153-167 Phenotype denotes Abdominal pain http://purl.obolibrary.org/obo/HP_0002027
T445 168-176 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T446 177-185 Phenotype denotes Jaundice http://purl.obolibrary.org/obo/HP_0000952
T447 335-343 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T448 570-576 Phenotype denotes nausea http://purl.obolibrary.org/obo/HP_0002018
T449 584-592 Phenotype denotes vomiting http://purl.obolibrary.org/obo/HP_0002013
T450 628-634 Phenotype denotes nausea http://purl.obolibrary.org/obo/HP_0002018
T451 649-657 Phenotype denotes vomiting http://purl.obolibrary.org/obo/HP_0002013

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T956 0-68 Sentence denotes Supplementary Table 2 Direct Evidence of Proposed COVID-19 Therapies
T957 69-136 Sentence denotes Medication class Medication Sourcea Study Design GI adverse effects
T958 137-200 Sentence denotes Nausea/vomiting Abdominal pain Diarrhea Jaundice Hepatotoxicity
T959 201-355 Sentence denotes Antiviral Favipiravir Cai, 2020109 Open-label control study (favipiravir and lopinavir/ ritonavir) for COVID-19 NR NR 2/35 (5.7%) had diarrhea 1/35 (2.9%)
T960 356-493 Sentence denotes Chen, 202092 Open-label RCT for favipiravir vs arbidol (n = 120) in COVID-19 “Digestive tract reactions” 16/116 (13.79%) NR 9/116 (7.76%)
T961 494-830 Sentence denotes Lopinavir/ritonavir Cao,89 2020 RCT in severe COVID-19 (n = 199) 10/95 with nausea + 6/96 vomiting (reported separately) vs 0/99 with nausea and 0/99 with vomiting in control 4/95 in treatment group vs 2/99 in control group 4/95 in treatment group vs 0/99 in control group 6/95 in treatment group vs. 5/99 in control group Elevated AST:
T962 831-889 Sentence denotes 4/95 in treatment vs. 9/99 in control group; Elevated ALT:
T963 890-932 Sentence denotes 2/95 in treatment vs 5/99 in control group
T964 933-1054 Sentence denotes Remdesivir Holshue,103 2020 Case report (first COVID in United States): remdesvir given day 7; no adverse events reported
T965 1055-1205 Sentence denotes Antimalarial Chloroquine Cortegiani,104 2020 Systematic review on efficacy and safety in COVID-19 Not reported in systematic review or primary studies
T966 1206-1224 Sentence denotes Hydroxychloroquine
T967 1225-1242 Sentence denotes NR, not reported.
T968 1243-1304 Sentence denotes a Sources include existing systematic reviews where possible.
T969 1305-1350 Sentence denotes If not available, primary sources are listed.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2515 885-891 Gene denotes ALT: 2 Gene:84706
2516 118-120 Gene denotes GI Gene:2770
2517 278-298 Chemical denotes lopinavir/ ritonavir MESH:C558899
2518 494-513 Chemical denotes Lopinavir/ritonavir MESH:C558899
2519 933-943 Chemical denotes Remdesivir MESH:C000606551
2520 137-143 Disease denotes Nausea MESH:D009325
2521 144-200 Disease denotes vomiting Abdominal pain Diarrhea Jaundice Hepatotoxicity MESH:D015746
2522 304-312 Disease denotes COVID-19 MESH:C000657245
2523 335-343 Disease denotes diarrhea MESH:D003967
2524 424-432 Disease denotes COVID-19 MESH:C000657245
2525 540-548 Disease denotes COVID-19 MESH:C000657245
2526 570-576 Disease denotes nausea MESH:D009325
2527 584-592 Disease denotes vomiting MESH:D014839
2528 628-634 Disease denotes nausea MESH:D009325
2529 649-657 Disease denotes vomiting MESH:D014839
2530 980-985 Disease denotes COVID MESH:C000657245
2531 1144-1152 Disease denotes COVID-19 MESH:C000657245
2533 50-58 Disease denotes COVID-19 MESH:C000657245