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PMC:7205724 / 20158-20486 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
684 48-56 Species denotes SARS-CoV Tax:694009
685 157-166 Species denotes SARS-CoV2 Tax:2697049
686 171-179 Species denotes SARS-CoV Tax:694009
689 28-37 Disease denotes infection MESH:D007239
690 118-127 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T148 256-264 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T146 28-37 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T147 48-56 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T148 118-127 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T149 157-161 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T150 171-179 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T235 17-19 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T236 107-109 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T237 274-281 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T166 256-264 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T92 28-37 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection
T93 118-127 http://purl.obolibrary.org/obo/IDO_0000586 denotes infection
T94 274-281 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T108 256-264 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T191 48-56 Species denotes SARS-CoV NCBItxid:694009
T192 157-166 Species denotes SARS-CoV2 NCBItxid:2697049
T193 171-179 Species denotes SARS-CoV NCBItxid:694009
T194 274-281 Species denotes viruses NCBItxid:10239

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T162 44-133 Sentence denotes For SARS-CoV, such an effect was present at 24 h but absent at 48 h after infection [25].
T163 134-320 Sentence denotes The difference between SARS-CoV2 and SARS-CoV in response to type I IFN treatment may be due to differences in structural proteins of these viruses, including NSP3, ORF3b, and ORF6 [25].

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
689 28-37 Disease denotes infection MESH:D007239
684 48-56 Species denotes SARS-CoV Tax:694009
690 118-127 Disease denotes infection MESH:D007239
685 157-166 Species denotes SARS-CoV2 Tax:2697049
686 171-179 Species denotes SARS-CoV Tax:694009

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1989 245-264 Protein denotes structural proteins https://www.uniprot.org/uniprot/Q6LEG6|https://www.uniprot.org/uniprot/Q04766|https://www.uniprot.org/uniprot/Q04765
T1992 293-297 Protein denotes NSP3 https://www.uniprot.org/uniprot/Q9QNA7|https://www.uniprot.org/uniprot/Q9PY95|https://www.uniprot.org/uniprot/Q9ICB2|https://www.uniprot.org/uniprot/Q91ME7|https://www.uniprot.org/uniprot/Q8UZL8|https://www.uniprot.org/uniprot/Q8B6X8|https://www.uniprot.org/uniprot/Q8B6X7|https://www.uniprot.org/uniprot/Q86504|https://www.uniprot.org/uniprot/Q86196|https://www.uniprot.org/uniprot/Q85014|https://www.uniprot.org/uniprot/Q82054|https://www.uniprot.org/uniprot/Q82053|https://www.uniprot.org/uniprot/Q82052|https://www.uniprot.org/uniprot/Q82051|https://www.uniprot.org/uniprot/Q82050|https://www.uniprot.org/uniprot/Q82049|https://www.uniprot.org/uniprot/Q65701|https://www.uniprot.org/uniprot/Q5Y9A9|https://www.uniprot.org/uniprot/Q5K037|https://www.uniprot.org/uniprot/Q45UF3|https://www.uniprot.org/uniprot/Q3ZK63|https://www.uniprot.org/uniprot/Q27PP2|https://www.uniprot.org/uniprot/Q0H8C1|https://www.uniprot.org/uniprot/Q00721|https://www.uniprot.org/uniprot/P34717|https://www.uniprot.org/uniprot/P27586|https://www.uniprot.org/uniprot/P04514|https://www.uniprot.org/uniprot/P03536|https://www.uniprot.org/uniprot/B3SRX7|https://www.uniprot.org/uniprot/B3SRW9|https://www.uniprot.org/uniprot/B3SRV3|https://www.uniprot.org/uniprot/B3SRU5|https://www.uniprot.org/uniprot/B3SRS9|https://www.uniprot.org/uniprot/B3SRS1|https://www.uniprot.org/uniprot/B3SRR3|https://www.uniprot.org/uniprot/B3SRQ5|https://www.uniprot.org/uniprot/B2BRG4|https://www.uniprot.org/uniprot/A4ZCW4|https://www.uniprot.org/uniprot/A3DSK9|https://www.uniprot.org/uniprot/A2T3N5|https://www.uniprot.org/uniprot/A1YTU9
T2033 310-314 Protein denotes ORF6 https://www.uniprot.org/uniprot/P51707|https://www.uniprot.org/uniprot/P42541|https://www.uniprot.org/uniprot/P0DTC6

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T86722 2-4 IN denotes at
T26971 5-9 CC denotes both
T35627 10-12 CD denotes 24
T29701 13-16 CC denotes and
T48153 17-21 NN denotes 48 h
T93874 22-27 IN denotes after
T7550 28-37 NN denotes infection
T23827 38-39 -LRB- denotes [
T6071 39-41 CD denotes 25
T91011 41-42 -RRB- denotes ]
T51029 44-47 IN denotes For
T64526 48-56 NN denotes SARS-CoV
T41819 56-57 -COMMA- denotes ,
T5764 58-62 PDT denotes such
T79954 63-65 DT denotes an
T48924 66-72 NN denotes effect
T40034 73-76 VBD denotes was
T1935 77-84 JJ denotes present
T31311 85-87 IN denotes at
T94385 88-92 CD denotes 24 h
T84543 93-96 CC denotes but
T64490 97-103 JJ denotes absent
T33679 104-106 IN denotes at
T68271 107-111 NN denotes 48 h
T69307 112-117 IN denotes after
T51672 118-127 NN denotes infection
T85433 128-129 -LRB- denotes [
T72350 129-131 CD denotes 25
T63406 131-132 -RRB- denotes ]
T46096 134-137 DT denotes The
T71403 138-148 NN denotes difference
T17651 149-156 IN denotes between
T77482 157-166 NN denotes SARS-CoV2
T6733 167-170 CC denotes and
T6622 171-179 NN denotes SARS-CoV
T66580 180-182 IN denotes in
T74975 183-191 NN denotes response
T1853 192-194 TO denotes to
T87892 195-199 NN denotes type
T83308 200-201 CD denotes I
T81934 202-205 NN denotes IFN
T42652 206-215 NN denotes treatment
T91527 216-219 MD denotes may
T42839 220-222 VB denotes be
T98810 223-226 JJ denotes due
T31126 227-229 TO denotes to
T23141 230-241 NNS denotes differences
T45488 242-244 IN denotes in
T39296 245-255 JJ denotes structural
T12723 256-264 NNS denotes proteins
T40582 265-267 IN denotes of
T48639 268-273 DT denotes these
T20513 274-281 NNS denotes viruses
T37519 281-282 -COMMA- denotes ,
T18237 283-292 VBG denotes including
T17094 293-297 NN denotes NSP3
T86991 297-298 -COMMA- denotes ,
T14810 299-304 NN denotes ORF3b
T9269 304-305 -COMMA- denotes ,
T18064 306-309 CC denotes and
T40695 310-314 NN denotes ORF6
T59456 315-316 -LRB- denotes [
T34145 316-318 CD denotes 25
T98303 318-319 -RRB- denotes ]
T22399 322-323 CD denotes 6
R26206 T29701 T86722 arg2Of and,at
R82903 T29701 T26971 arg1Of and,both
R75547 T35627 T29701 arg1Of 24,and
R90827 T48153 T29701 arg2Of 48 h,and
R47977 T7550 T93874 arg2Of infection,after
R38076 T7550 T23827 arg1Of infection,[
R72421 T6071 T23827 arg2Of 25,[
R2860 T91011 T23827 arg3Of ],[
R21012 T40034 T51029 arg1Of was,For
R42425 T64526 T51029 arg2Of SARS-CoV,For
R88091 T40034 T41819 arg1Of was,","
R54495 T48924 T5764 arg1Of effect,such
R26625 T48924 T79954 arg1Of effect,an
R41534 T48924 T40034 arg1Of effect,was
R24883 T84543 T40034 arg2Of but,was
R86398 T48924 T1935 arg1Of effect,present
R81876 T1935 T31311 arg1Of present,at
R72270 T94385 T31311 arg2Of 24 h,at
R12851 T1935 T84543 arg1Of present,but
R60363 T64490 T84543 arg2Of absent,but
R81621 T48924 T64490 arg1Of effect,absent
R79664 T84543 T33679 arg1Of but,at
R9487 T68271 T33679 arg2Of 48 h,at
R71731 T68271 T69307 arg1Of 48 h,after
R56025 T51672 T69307 arg2Of infection,after
R2152 T51672 T85433 arg1Of infection,[
R22284 T72350 T85433 arg2Of 25,[
R9566 T63406 T85433 arg3Of ],[
R51347 T71403 T46096 arg1Of difference,The
R4839 T71403 T17651 arg1Of difference,between
R32316 T6733 T17651 arg2Of and,between
R84108 T77482 T6733 arg1Of SARS-CoV2,and
R18562 T6622 T6733 arg2Of SARS-CoV,and
R2587 T6733 T66580 arg1Of and,in
R24267 T74975 T66580 arg2Of response,in
R82007 T74975 T1853 arg1Of response,to
R35751 T42652 T1853 arg2Of treatment,to
R70872 T42652 T87892 arg1Of treatment,type
R16675 T42652 T83308 arg1Of treatment,I
R93961 T42652 T81934 arg1Of treatment,IFN
R17630 T71403 T91527 arg1Of difference,may
R18684 T42839 T91527 arg2Of be,may
R22926 T71403 T42839 arg1Of difference,be
R74216 T31126 T42839 arg2Of to,be
R18552 T31126 T98810 arg1Of to,due
R78491 T71403 T31126 arg1Of difference,to
R99441 T23141 T31126 arg2Of differences,to
R87106 T23141 T45488 arg1Of differences,in
R95354 T12723 T45488 arg2Of proteins,in
R28120 T12723 T39296 arg1Of proteins,structural
R78454 T12723 T40582 arg1Of proteins,of
R26738 T20513 T40582 arg2Of viruses,of
R35077 T20513 T48639 arg1Of viruses,these
R70559 T12723 T37519 arg1Of proteins,","
R50810 T12723 T18237 arg1Of proteins,including
R8147 T18064 T18237 arg2Of and,including
R72409 T17094 T86991 arg1Of NSP3,","
R12802 T14810 T86991 arg2Of ORF3b,","
R29123 T18064 T9269 arg1Of and,","
R68379 T86991 T18064 arg1Of ",",and
R4978 T40695 T18064 arg2Of ORF6,and
R22872 T18064 T59456 arg1Of and,[
R60583 T34145 T59456 arg2Of 25,[
R50503 T98303 T59456 arg3Of ],[

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T29 183-205 http://purl.obolibrary.org/obo/GO_0034340 denotes response to type I IFN

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T148 256-264 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T141 28-37 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T142 48-56 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T143 118-127 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T144 157-166 Disease denotes SARS-CoV2 http://purl.obolibrary.org/obo/MONDO_0100096
T145 171-179 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T25 183-205 http://purl.obolibrary.org/obo/GO_0034340 denotes response to type I IFN

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T25 183-205 http://purl.obolibrary.org/obo/GO_0034340 denotes response to type I IFN

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T162 44-133 Sentence denotes For SARS-CoV, such an effect was present at 24 h but absent at 48 h after infection [25].
T163 134-320 Sentence denotes The difference between SARS-CoV2 and SARS-CoV in response to type I IFN treatment may be due to differences in structural proteins of these viruses, including NSP3, ORF3b, and ORF6 [25].