PMC:7200337 / 106316-107329 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
32505227-32022276-46575455 667-671 32022276 denotes 2020
32505227-32183941-46575456 735-739 32183941 denotes 2020
32505227-32132669-46575457 775-779 32132669 denotes 2020
32505227-32183941-46575458 1007-1011 32183941 denotes 2020
T35612 667-671 32022276 denotes 2020
T23493 735-739 32183941 denotes 2020
T15418 775-779 32132669 denotes 2020
T66082 1007-1011 32183941 denotes 2020

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T30 51-58 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T31 148-155 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T32 177-185 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T33 246-251 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 427-431 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T35 460-468 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T36 538-546 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T37 794-801 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T38 847-854 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T39 882-890 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T40 912-916 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T609 320-328 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T610 335-343 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T611 858-866 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T612 970-978 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T84 244-251 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T85 419-420 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T86 425-431 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T87 802-805 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T88 904-905 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T89 910-916 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T50430 51-58 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T25409 148-155 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T90657 177-185 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T83746 460-468 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T81019 513-520 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T98403 794-801 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T30623 847-854 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T56251 882-890 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T10 513-533 http://purl.obolibrary.org/obo/GO_0019882 denotes antigen presentation

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3531 874-875 Gene denotes M Gene:43740571
3532 880-881 Gene denotes N Gene:43740575
3533 817-819 Gene denotes to Gene:6999
3534 389-391 Gene denotes to Gene:6999
3535 320-330 Species denotes SARS-CoV-2 Tax:2697049
3536 335-343 Species denotes SARS-CoV Tax:694009
3537 350-358 Species denotes MERS-CoV Tax:1335626
3538 858-868 Species denotes SARS-CoV-2 Tax:2697049
3539 970-978 Species denotes SARS-CoV Tax:694009

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T635 0-252 Sentence denotes Although the antibodies targeting the RBD of the S protein have greater potential for providing cross-protective immunity, other fragments of the S protein and additional viral proteins have been investigated as target epitopes, especially for T cells.
T636 253-781 Sentence denotes Researchers have taken advantage of the genetic similarity between SARS-CoV-2 and SARS-CoV-1 and MERS-CoV and bioinformatics approaches to rapidly identify potential B and T cell epitopes in the S and other proteins, with many studies providing data regarding antigen presentation and antibody-binding properties and one study looking into the predicted evolution of epitopes (Ahmed et al., 2020, Baruah and Bose, 2020, Bhattacharya et al., 2020, Fast et al., 2020, Grifoni et al., 2020, Lon et al., 2020, Zheng and Song, 2020).
T637 782-1013 Sentence denotes While the S protein has been found to be the most immunodominant protein in SARS-CoV-2, the M and N proteins also contain B and T cell epitopes, including some with high conservation with SARS-CoV-1 epitopes (Grifoni et al., 2020).