PMC:7172841 / 2076-3013 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7172841","sourcedb":"PMC","sourceid":"7172841","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7172841","text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020).","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T22","span":{"begin":659,"end":663},"obj":"Body_part"}],"attributes":[{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma7195"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":659,"end":663},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T28","span":{"begin":68,"end":77},"obj":"Disease"},{"id":"T29","span":{"begin":216,"end":249},"obj":"Disease"},{"id":"T30","span":{"begin":251,"end":255},"obj":"Disease"},{"id":"T31","span":{"begin":285,"end":289},"obj":"Disease"},{"id":"T32","span":{"begin":306,"end":314},"obj":"Disease"},{"id":"T33","span":{"begin":306,"end":310},"obj":"Disease"},{"id":"T34","span":{"begin":323,"end":332},"obj":"Disease"},{"id":"T35","span":{"begin":692,"end":701},"obj":"Disease"},{"id":"T36","span":{"begin":728,"end":737},"obj":"Disease"},{"id":"T37","span":{"begin":771,"end":790},"obj":"Disease"}],"attributes":[{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A37","pred":"mondo_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/MONDO_0021113"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T36","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T37","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T20","span":{"begin":55,"end":56},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T21","span":{"begin":172,"end":173},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T22","span":{"begin":402,"end":403},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T23","span":{"begin":433,"end":445},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T24","span":{"begin":637,"end":640},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T25","span":{"begin":641,"end":642},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T26","span":{"begin":659,"end":663},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T27","span":{"begin":659,"end":663},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"}],"attributes":[{"subj":"T20","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T18","span":{"begin":848,"end":850},"obj":"Chemical"}],"attributes":[{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_73616"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T15","span":{"begin":643,"end":650},"obj":"http://purl.obolibrary.org/obo/GO_0009606"}],"attributes":[{"subj":"T15","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T21","span":{"begin":0,"end":121},"obj":"Sentence"},{"id":"T22","span":{"begin":122,"end":318},"obj":"Sentence"},{"id":"T23","span":{"begin":319,"end":446},"obj":"Sentence"},{"id":"T24","span":{"begin":447,"end":613},"obj":"Sentence"},{"id":"T25","span":{"begin":614,"end":708},"obj":"Sentence"},{"id":"T26","span":{"begin":709,"end":852},"obj":"Sentence"},{"id":"T27","span":{"begin":853,"end":937},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T21","pred":"source","obj":"LitCovid-sentences"},{"subj":"T22","pred":"source","obj":"LitCovid-sentences"},{"subj":"T23","pred":"source","obj":"LitCovid-sentences"},{"subj":"T24","pred":"source","obj":"LitCovid-sentences"},{"subj":"T25","pred":"source","obj":"LitCovid-sentences"},{"subj":"T26","pred":"source","obj":"LitCovid-sentences"},{"subj":"T27","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T13","span":{"begin":68,"end":77},"obj":"Phenotype"},{"id":"T14","span":{"begin":692,"end":701},"obj":"Phenotype"},{"id":"T15","span":{"begin":728,"end":737},"obj":"Phenotype"},{"id":"T16","span":{"begin":771,"end":790},"obj":"Phenotype"}],"attributes":[{"id":"A13","pred":"hp_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A14","pred":"hp_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A15","pred":"hp_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A16","pred":"hp_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/HP_0002878"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T83","span":{"begin":180,"end":191},"obj":"NCBITaxon:11118"},{"id":"T84","span":{"begin":229,"end":240},"obj":"UBERON:0001004"},{"id":"T85","span":{"begin":251,"end":255},"obj":"SP_10"},{"id":"T86","span":{"begin":285,"end":289},"obj":"SP_10"},{"id":"T87","span":{"begin":290,"end":301},"obj":"NCBITaxon:11118"},{"id":"T88","span":{"begin":306,"end":316},"obj":"SP_7"},{"id":"T89","span":{"begin":542,"end":546},"obj":"GO:0016265"},{"id":"T90","span":{"begin":595,"end":606},"obj":"NCBITaxon:11118"},{"id":"T91","span":{"begin":625,"end":636},"obj":"NCBITaxon:11118"},{"id":"T92","span":{"begin":659,"end":663},"obj":"UBERON:0002048"},{"id":"T93","span":{"begin":771,"end":782},"obj":"UBERON:0001004"},{"id":"T94","span":{"begin":865,"end":870},"obj":"GO:0016265"}],"attributes":[{"subj":"T83","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T84","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T85","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T86","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T87","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T88","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T89","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T90","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T91","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T92","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T93","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T94","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"119","span":{"begin":174,"end":191},"obj":"Species"},{"id":"120","span":{"begin":285,"end":301},"obj":"Species"},{"id":"121","span":{"begin":306,"end":316},"obj":"Species"},{"id":"122","span":{"begin":529,"end":537},"obj":"Species"},{"id":"123","span":{"begin":619,"end":636},"obj":"Species"},{"id":"124","span":{"begin":714,"end":722},"obj":"Species"},{"id":"125","span":{"begin":880,"end":888},"obj":"Species"},{"id":"126","span":{"begin":68,"end":77},"obj":"Disease"},{"id":"127","span":{"begin":216,"end":249},"obj":"Disease"},{"id":"128","span":{"begin":323,"end":332},"obj":"Disease"},{"id":"129","span":{"begin":542,"end":546},"obj":"Disease"},{"id":"130","span":{"begin":595,"end":611},"obj":"Disease"},{"id":"131","span":{"begin":692,"end":701},"obj":"Disease"},{"id":"132","span":{"begin":728,"end":737},"obj":"Disease"},{"id":"133","span":{"begin":771,"end":790},"obj":"Disease"},{"id":"134","span":{"begin":792,"end":795},"obj":"Disease"},{"id":"135","span":{"begin":865,"end":870},"obj":"Disease"}],"attributes":[{"id":"A119","pred":"tao:has_database_id","subj":"119","obj":"Tax:2697049"},{"id":"A120","pred":"tao:has_database_id","subj":"120","obj":"Tax:694009"},{"id":"A121","pred":"tao:has_database_id","subj":"121","obj":"Tax:2697049"},{"id":"A122","pred":"tao:has_database_id","subj":"122","obj":"Tax:9606"},{"id":"A123","pred":"tao:has_database_id","subj":"123","obj":"Tax:2697049"},{"id":"A124","pred":"tao:has_database_id","subj":"124","obj":"Tax:9606"},{"id":"A125","pred":"tao:has_database_id","subj":"125","obj":"Tax:9606"},{"id":"A126","pred":"tao:has_database_id","subj":"126","obj":"MESH:D011014"},{"id":"A127","pred":"tao:has_database_id","subj":"127","obj":"MESH:D045169"},{"id":"A128","pred":"tao:has_database_id","subj":"128","obj":"MESH:D007239"},{"id":"A129","pred":"tao:has_database_id","subj":"129","obj":"MESH:D003643"},{"id":"A130","pred":"tao:has_database_id","subj":"130","obj":"MESH:C000657245"},{"id":"A131","pred":"tao:has_database_id","subj":"131","obj":"MESH:D011014"},{"id":"A132","pred":"tao:has_database_id","subj":"132","obj":"MESH:D011014"},{"id":"A133","pred":"tao:has_database_id","subj":"133","obj":"MESH:D012131"},{"id":"A135","pred":"tao:has_database_id","subj":"135","obj":"MESH:D003643"},{"subj":"119","pred":"source","obj":"LitCovid-PubTator"},{"subj":"120","pred":"source","obj":"LitCovid-PubTator"},{"subj":"121","pred":"source","obj":"LitCovid-PubTator"},{"subj":"122","pred":"source","obj":"LitCovid-PubTator"},{"subj":"123","pred":"source","obj":"LitCovid-PubTator"},{"subj":"124","pred":"source","obj":"LitCovid-PubTator"},{"subj":"125","pred":"source","obj":"LitCovid-PubTator"},{"subj":"126","pred":"source","obj":"LitCovid-PubTator"},{"subj":"127","pred":"source","obj":"LitCovid-PubTator"},{"subj":"128","pred":"source","obj":"LitCovid-PubTator"},{"subj":"129","pred":"source","obj":"LitCovid-PubTator"},{"subj":"130","pred":"source","obj":"LitCovid-PubTator"},{"subj":"131","pred":"source","obj":"LitCovid-PubTator"},{"subj":"132","pred":"source","obj":"LitCovid-PubTator"},{"subj":"133","pred":"source","obj":"LitCovid-PubTator"},{"subj":"134","pred":"source","obj":"LitCovid-PubTator"},{"subj":"135","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93d9","default":true},{"id":"LitCovid-PD-UBERON","color":"#93ece5"},{"id":"LitCovid-PD-MONDO","color":"#eccb93"},{"id":"LitCovid-PD-CLO","color":"#b193ec"},{"id":"LitCovid-PD-CHEBI","color":"#93ec97"},{"id":"LitCovid-PD-GO-BP","color":"#ec93a9"},{"id":"LitCovid-sentences","color":"#93c3ec"},{"id":"LitCovid-PD-HP","color":"#ddec93"},{"id":"LitCovid-PMC-OGER-BB","color":"#e193ec"},{"id":"LitCovid-PubTator","color":"#93ecc7"}]}]}}