PMC:7172841 / 2076-3013 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T22","span":{"begin":659,"end":663},"obj":"Body_part"}],"attributes":[{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma7195"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":659,"end":663},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T28","span":{"begin":68,"end":77},"obj":"Disease"},{"id":"T29","span":{"begin":216,"end":249},"obj":"Disease"},{"id":"T30","span":{"begin":251,"end":255},"obj":"Disease"},{"id":"T31","span":{"begin":285,"end":289},"obj":"Disease"},{"id":"T32","span":{"begin":306,"end":314},"obj":"Disease"},{"id":"T33","span":{"begin":306,"end":310},"obj":"Disease"},{"id":"T34","span":{"begin":323,"end":332},"obj":"Disease"},{"id":"T35","span":{"begin":692,"end":701},"obj":"Disease"},{"id":"T36","span":{"begin":728,"end":737},"obj":"Disease"},{"id":"T37","span":{"begin":771,"end":790},"obj":"Disease"}],"attributes":[{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A37","pred":"mondo_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/MONDO_0021113"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T20","span":{"begin":55,"end":56},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T21","span":{"begin":172,"end":173},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T22","span":{"begin":402,"end":403},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T23","span":{"begin":433,"end":445},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T24","span":{"begin":637,"end":640},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T25","span":{"begin":641,"end":642},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T26","span":{"begin":659,"end":663},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T27","span":{"begin":659,"end":663},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T18","span":{"begin":848,"end":850},"obj":"Chemical"}],"attributes":[{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_73616"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T15","span":{"begin":643,"end":650},"obj":"http://purl.obolibrary.org/obo/GO_0009606"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T21","span":{"begin":0,"end":121},"obj":"Sentence"},{"id":"T22","span":{"begin":122,"end":318},"obj":"Sentence"},{"id":"T23","span":{"begin":319,"end":446},"obj":"Sentence"},{"id":"T24","span":{"begin":447,"end":613},"obj":"Sentence"},{"id":"T25","span":{"begin":614,"end":708},"obj":"Sentence"},{"id":"T26","span":{"begin":709,"end":852},"obj":"Sentence"},{"id":"T27","span":{"begin":853,"end":937},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T13","span":{"begin":68,"end":77},"obj":"Phenotype"},{"id":"T14","span":{"begin":692,"end":701},"obj":"Phenotype"},{"id":"T15","span":{"begin":728,"end":737},"obj":"Phenotype"},{"id":"T16","span":{"begin":771,"end":790},"obj":"Phenotype"}],"attributes":[{"id":"A13","pred":"hp_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A14","pred":"hp_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A15","pred":"hp_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A16","pred":"hp_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/HP_0002878"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T83","span":{"begin":180,"end":191},"obj":"NCBITaxon:11118"},{"id":"T84","span":{"begin":229,"end":240},"obj":"UBERON:0001004"},{"id":"T85","span":{"begin":251,"end":255},"obj":"SP_10"},{"id":"T86","span":{"begin":285,"end":289},"obj":"SP_10"},{"id":"T87","span":{"begin":290,"end":301},"obj":"NCBITaxon:11118"},{"id":"T88","span":{"begin":306,"end":316},"obj":"SP_7"},{"id":"T89","span":{"begin":542,"end":546},"obj":"GO:0016265"},{"id":"T90","span":{"begin":595,"end":606},"obj":"NCBITaxon:11118"},{"id":"T91","span":{"begin":625,"end":636},"obj":"NCBITaxon:11118"},{"id":"T92","span":{"begin":659,"end":663},"obj":"UBERON:0002048"},{"id":"T93","span":{"begin":771,"end":782},"obj":"UBERON:0001004"},{"id":"T94","span":{"begin":865,"end":870},"obj":"GO:0016265"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"119","span":{"begin":174,"end":191},"obj":"Species"},{"id":"120","span":{"begin":285,"end":301},"obj":"Species"},{"id":"121","span":{"begin":306,"end":316},"obj":"Species"},{"id":"122","span":{"begin":529,"end":537},"obj":"Species"},{"id":"123","span":{"begin":619,"end":636},"obj":"Species"},{"id":"124","span":{"begin":714,"end":722},"obj":"Species"},{"id":"125","span":{"begin":880,"end":888},"obj":"Species"},{"id":"126","span":{"begin":68,"end":77},"obj":"Disease"},{"id":"127","span":{"begin":216,"end":249},"obj":"Disease"},{"id":"128","span":{"begin":323,"end":332},"obj":"Disease"},{"id":"129","span":{"begin":542,"end":546},"obj":"Disease"},{"id":"130","span":{"begin":595,"end":611},"obj":"Disease"},{"id":"131","span":{"begin":692,"end":701},"obj":"Disease"},{"id":"132","span":{"begin":728,"end":737},"obj":"Disease"},{"id":"133","span":{"begin":771,"end":790},"obj":"Disease"},{"id":"134","span":{"begin":792,"end":795},"obj":"Disease"},{"id":"135","span":{"begin":865,"end":870},"obj":"Disease"}],"attributes":[{"id":"A119","pred":"tao:has_database_id","subj":"119","obj":"Tax:2697049"},{"id":"A120","pred":"tao:has_database_id","subj":"120","obj":"Tax:694009"},{"id":"A121","pred":"tao:has_database_id","subj":"121","obj":"Tax:2697049"},{"id":"A122","pred":"tao:has_database_id","subj":"122","obj":"Tax:9606"},{"id":"A123","pred":"tao:has_database_id","subj":"123","obj":"Tax:2697049"},{"id":"A124","pred":"tao:has_database_id","subj":"124","obj":"Tax:9606"},{"id":"A125","pred":"tao:has_database_id","subj":"125","obj":"Tax:9606"},{"id":"A126","pred":"tao:has_database_id","subj":"126","obj":"MESH:D011014"},{"id":"A127","pred":"tao:has_database_id","subj":"127","obj":"MESH:D045169"},{"id":"A128","pred":"tao:has_database_id","subj":"128","obj":"MESH:D007239"},{"id":"A129","pred":"tao:has_database_id","subj":"129","obj":"MESH:D003643"},{"id":"A130","pred":"tao:has_database_id","subj":"130","obj":"MESH:C000657245"},{"id":"A131","pred":"tao:has_database_id","subj":"131","obj":"MESH:D011014"},{"id":"A132","pred":"tao:has_database_id","subj":"132","obj":"MESH:D011014"},{"id":"A133","pred":"tao:has_database_id","subj":"133","obj":"MESH:D012131"},{"id":"A135","pred":"tao:has_database_id","subj":"135","obj":"MESH:D003643"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent. The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2). The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization. As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019). This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP). Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV). The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020)."}