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PMC:7172841 / 2076-3013 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 659-663 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 659-663 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T28 68-77 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T29 216-249 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T30 251-255 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 285-289 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 306-314 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 306-310 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 323-332 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 692-701 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T36 728-737 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T37 771-790 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T20 55-56 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 172-173 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 402-403 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 433-445 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T24 637-640 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 641-642 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 659-663 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T27 659-663 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T18 848-850 Chemical denotes MV http://purl.obolibrary.org/obo/CHEBI_73616

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T15 643-650 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-121 Sentence denotes In December 2019, authorities in Wuhan, China reported a cluster of pneumonia cases caused by an unknown etiologic agent.
T22 122-318 Sentence denotes The pathogen was soon identified and sequenced as a novel coronavirus related to the agent of severe acute respiratory syndrome (SARS) and was subsequently termed SARS Coronavirus-19 (SARS-CoV-2).
T23 319-446 Sentence denotes The infection spread in the subsequent 3 months on all continents and was declared a pandemic by the World Health Organization.
T24 447-613 Sentence denotes As of April 2, 2020, 961,818 documented cases were reported worldwide, and 49,165 patients had died (https://www.who.int/emergencies/diseases/novel-coronavirus-2019).
T25 614-708 Sentence denotes This novel coronavirus has a tropism for the lung, causing community-acquired pneumonia (CAP).
T26 709-852 Sentence denotes Some patients with pneumonia suddenly deteriorate into severe respiratory failure (SRF) and require intubation and mechanical ventilation (MV).
T27 853-937 Sentence denotes The risk of death of these patients is high, reaching even 60% (Arabi et al., 2020).

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T13 68-77 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T14 692-701 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 728-737 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T16 771-790 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T83 180-191 NCBITaxon:11118 denotes coronavirus
T84 229-240 UBERON:0001004 denotes respiratory
T85 251-255 SP_10 denotes SARS
T86 285-289 SP_10 denotes SARS
T87 290-301 NCBITaxon:11118 denotes Coronavirus
T88 306-316 SP_7 denotes SARS-CoV-2
T89 542-546 GO:0016265 denotes died
T90 595-606 NCBITaxon:11118 denotes coronavirus
T91 625-636 NCBITaxon:11118 denotes coronavirus
T92 659-663 UBERON:0002048 denotes lung
T93 771-782 UBERON:0001004 denotes respiratory
T94 865-870 GO:0016265 denotes death

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
119 174-191 Species denotes novel coronavirus Tax:2697049
120 285-301 Species denotes SARS Coronavirus Tax:694009
121 306-316 Species denotes SARS-CoV-2 Tax:2697049
122 529-537 Species denotes patients Tax:9606
123 619-636 Species denotes novel coronavirus Tax:2697049
124 714-722 Species denotes patients Tax:9606
125 880-888 Species denotes patients Tax:9606
126 68-77 Disease denotes pneumonia MESH:D011014
127 216-249 Disease denotes severe acute respiratory syndrome MESH:D045169
128 323-332 Disease denotes infection MESH:D007239
129 542-546 Disease denotes died MESH:D003643
130 595-611 Disease denotes coronavirus-2019 MESH:C000657245
131 692-701 Disease denotes pneumonia MESH:D011014
132 728-737 Disease denotes pneumonia MESH:D011014
133 771-790 Disease denotes respiratory failure MESH:D012131
134 792-795 Disease denotes SRF
135 865-870 Disease denotes death MESH:D003643