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PMC:7144273 / 12405-13390 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T322 49-53 SO:0000704;GO:0010467 denotes gene
T323 54-64 GO:0010467 denotes expression
T324 94-99 SO:0000704 denotes genes
T325 110-115 SP_6;NCBITaxon:9606 denotes human
T326 116-127 CL:0002540;UBERON:0002371 denotes bone marrow
T327 136-147 UBERON:0003104;CL:0002540 denotes mesenchymal
T328 148-152 CL:0002540 denotes stem
T329 154-161 CL:0000499;UBERON:0003891 denotes stromal
T330 173-177 DG_47 denotes MSCs
T331 222-236 PR:000001136 denotes interleukin-1β
T332 329-333 SO:0000704;GO:0010467 denotes Gene
T333 334-344 GO:0010467 denotes expression
T334 403-408 PR:000029563 denotes ISG15
T335 410-419 PR:000035728 denotes ubiquitin
T336 434-438 PR:000002122 denotes CCL2
T337 440-461 PR:000002122 denotes C-C motif chemokine 2
T338 463-467 PR:000008909 denotes IFI6
T339 496-502 PR:000012900 denotes PMAIP1
T340 515-524 CHEBI:30807;CHEBI:30807 denotes myristate
T341 524-528 PR:000012900 denotes -13-
T342 528-535 PR:000012900;CHEBI:30089;CHEBI:30089 denotes acetate
T343 535-553 PR:000012900 denotes -induced protein 1
T344 574-587 GO:0016020 denotes transmembrane
T345 597-603 PR:000006103 denotes CYP1B1
T346 605-615 CHEBI:38559;CHEBI:38559 denotes cytochrome
T347 616-624 PR:000006103 denotes p450 1b1
T348 626-631 PR:000011350 denotes NPAS2
T349 633-641 CL:0000540 denotes neuronal
T350 646-652 SO:0000417;PR:000011350 denotes domain
T351 652-673 PR:000011350 denotes -containing protein 2
T352 675-681 PR:000016352 denotes TIMP-1
T353 683-700 PR:000016352 denotes metalloproteinase
T354 701-710 PR:000016352;CHEBI:35222;CHEBI:35222 denotes inhibitor
T355 711-712 PR:000016352 denotes 1
T356 747-755 PR:000014707 denotes SERPING1
T357 757-763 PR:000025875 denotes serpin
T358 783-789 UBERON:0001969;PR:000014707 denotes plasma
T359 790-801 PR:000014707 denotes protease C1
T360 802-811 PR:000014707;CHEBI:35222;CHEBI:35222 denotes inhibitor
T361 814-818 PR:000014466 denotes SAT1
T362 820-827 CHEBI:16189;CHEBI:16189;PR:000015035 denotes sulfate
T363 828-833 PR:000015035;CHEBI:22563;CHEBI:22563 denotes anion
T364 834-847 PR:000015035 denotes transporter 1
T365 866-872 PR:000008923 denotes IFNAR2
T366 874-879 PR:000008923 denotes IFN-α
T367 880-892 PR:000008923 denotes β receptor 2
T368 894-901 PR:000014944 denotes SLC16A1
T369 903-932 PR:000014944 denotes monocarboxylate transporter 1
T370 934-938 PR:000011596 denotes ODC1
T371 940-963 PR:000011596 denotes ornithine decarboxylase
T372 967-972 PR:000007721 denotes FZD-5
T373 974-984 PR:000007721 denotes Frizzled-5
T20978 49-53 SO:0000704;GO:0010467 denotes gene
T69876 54-64 GO:0010467 denotes expression
T38791 94-99 SO:0000704 denotes genes
T83557 110-115 SP_6;NCBITaxon:9606 denotes human
T58907 116-127 CL:0002540;UBERON:0002371 denotes bone marrow
T22586 136-147 UBERON:0003104;CL:0002540 denotes mesenchymal
T55901 148-152 CL:0002540 denotes stem
T72312 154-161 CL:0000499;UBERON:0003891 denotes stromal
T24390 173-177 DG_47 denotes MSCs
T71177 222-236 PR:000001136 denotes interleukin-1β
T84692 329-333 SO:0000704;GO:0010467 denotes Gene
T19881 334-344 GO:0010467 denotes expression
T48735 403-408 PR:000029563 denotes ISG15
T5162 410-419 PR:000035728 denotes ubiquitin
T84662 434-438 PR:000002122 denotes CCL2
T34508 440-461 PR:000002122 denotes C-C motif chemokine 2
T87065 463-467 PR:000008909 denotes IFI6
T53347 496-502 PR:000012900 denotes PMAIP1
T12212 515-524 CHEBI:30807;CHEBI:30807 denotes myristate
T8620 524-528 PR:000012900 denotes -13-
T60298 528-535 PR:000012900;CHEBI:30089;CHEBI:30089 denotes acetate
T31432 535-553 PR:000012900 denotes -induced protein 1
T81095 574-587 GO:0016020 denotes transmembrane
T94433 597-603 PR:000006103 denotes CYP1B1
T96556 605-615 CHEBI:38559;CHEBI:38559 denotes cytochrome
T97722 616-624 PR:000006103 denotes p450 1b1
T75644 626-631 PR:000011350 denotes NPAS2
T35009 633-641 CL:0000540 denotes neuronal
T70573 646-652 SO:0000417;PR:000011350 denotes domain
T2862 652-673 PR:000011350 denotes -containing protein 2
T20522 675-681 PR:000016352 denotes TIMP-1
T54542 683-700 PR:000016352 denotes metalloproteinase
T51369 701-710 PR:000016352;CHEBI:35222;CHEBI:35222 denotes inhibitor
T41094 711-712 PR:000016352 denotes 1
T97892 747-755 PR:000014707 denotes SERPING1
T55345 757-763 PR:000025875 denotes serpin
T75483 783-789 UBERON:0001969;PR:000014707 denotes plasma
T72519 790-801 PR:000014707 denotes protease C1
T35931 802-811 PR:000014707;CHEBI:35222;CHEBI:35222 denotes inhibitor
T60596 814-818 PR:000014466 denotes SAT1
T90031 820-827 CHEBI:16189;CHEBI:16189;PR:000015035 denotes sulfate
T42514 828-833 PR:000015035;CHEBI:22563;CHEBI:22563 denotes anion
T86161 834-847 PR:000015035 denotes transporter 1
T55288 866-872 PR:000008923 denotes IFNAR2
T63551 874-879 PR:000008923 denotes IFN-α
T12019 880-892 PR:000008923 denotes β receptor 2
T78486 894-901 PR:000014944 denotes SLC16A1
T60173 903-932 PR:000014944 denotes monocarboxylate transporter 1
T23746 934-938 PR:000011596 denotes ODC1
T82997 940-963 PR:000011596 denotes ornithine decarboxylase
T52832 967-972 PR:000007721 denotes FZD-5
T36595 974-984 PR:000007721 denotes Frizzled-5

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T111 49-53 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T112 116-127 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T113 163-168 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T114 211-220 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T115 222-235 Body_part denotes interleukin-1 http://purl.org/sig/ont/fma/fma86583
T116 329-333 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T117 425-432 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T118 450-459 Body_part denotes chemokine http://purl.org/sig/ont/fma/fma241981
T119 485-492 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T120 544-551 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T121 574-595 Body_part denotes transmembrane protein http://purl.org/sig/ont/fma/fma67858
T122 664-671 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T123 783-789 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T28 116-127 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T102 642-645 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T103 849-852 Disease denotes GCA http://purl.obolibrary.org/obo/MONDO_0008538

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T147 49-53 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T148 94-99 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T149 110-115 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T150 116-120 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T151 153-168 http://purl.obolibrary.org/obo/CL_0000499 denotes (stromal) cells
T152 170-172 http://purl.obolibrary.org/obo/CLO_0001997 denotes BM
T153 179-188 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T154 222-235 http://purl.obolibrary.org/obo/PR_000001091 denotes interleukin-1
T155 329-333 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T156 357-358 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T157 377-378 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T158 757-763 http://purl.obolibrary.org/obo/PR_000025875 denotes serpin
T159 783-789 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T160 799-801 http://purl.obolibrary.org/obo/CLO_0051741 denotes C1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T60 72-82 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T61 267-277 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T62 279-282 Chemical denotes IFN http://purl.obolibrary.org/obo/CHEBI_52999
T63 425-432 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T64 469-472 Chemical denotes IFN http://purl.obolibrary.org/obo/CHEBI_52999
T65 485-492 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T66 504-535 Chemical denotes phorbol-12-myristate-13-acetate http://purl.obolibrary.org/obo/CHEBI_37537
T67 504-511 Chemical denotes phorbol http://purl.obolibrary.org/obo/CHEBI_8116
T68 515-524 Chemical denotes myristate http://purl.obolibrary.org/obo/CHEBI_30807
T69 528-535 Chemical denotes acetate http://purl.obolibrary.org/obo/CHEBI_30089|http://purl.obolibrary.org/obo/CHEBI_47622
T71 544-551 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T72 562-565 Chemical denotes IFN http://purl.obolibrary.org/obo/CHEBI_52999
T73 588-595 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T74 605-615 Chemical denotes cytochrome http://purl.obolibrary.org/obo/CHEBI_4056
T75 642-645 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T76 664-671 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T77 701-710 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T78 802-811 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T79 820-827 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T80 828-833 Chemical denotes anion http://purl.obolibrary.org/obo/CHEBI_22563
T81 849-852 Chemical denotes GCA http://purl.obolibrary.org/obo/CHEBI_139037
T82 874-877 Chemical denotes IFN http://purl.obolibrary.org/obo/CHEBI_52999
T83 940-949 Chemical denotes ornithine http://purl.obolibrary.org/obo/CHEBI_18257

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T36 49-64 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T37 245-253 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T38 245-253 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T39 245-253 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T40 245-253 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T41 329-344 http://purl.obolibrary.org/obo/GO_0010467 denotes Gene expression
T42 605-615 http://purl.obolibrary.org/obo/GO_0045158 denotes cytochrome
T43 605-615 http://purl.obolibrary.org/obo/GO_0045157 denotes cytochrome
T44 605-615 http://purl.obolibrary.org/obo/GO_0045156 denotes cytochrome
T45 605-615 http://purl.obolibrary.org/obo/GO_0008121 denotes cytochrome
T46 683-710 http://purl.obolibrary.org/obo/GO_0008191 denotes metalloproteinase inhibitor
T47 814-818 http://purl.obolibrary.org/obo/GO_0047291 denotes SAT1
T48 828-845 http://purl.obolibrary.org/obo/GO_0006820 denotes anion transporter
T49 919-930 http://purl.obolibrary.org/obo/GO_0006810 denotes transporter

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T19 238-244 Phenotype denotes tumour http://purl.obolibrary.org/obo/HP_0002664

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T60 0-328 Sentence denotes FIGURE 2 Representative volcano plot analysis of gene expression of the interferon-stimulated genes (ISGs) in human bone marrow-derived mesenchymal stem (stromal) cells (BM-MSCs) activated with pro-inflammatory cytokines (interleukin-1β, tumour necrosis factor-α and interferon (IFN)-γ), versus control, in GEO dataset GSE68610.
T61 329-402 Sentence denotes Gene expression analysis of a) constitutive and b) non-constitutive ISGs.
T62 403-973 Sentence denotes ISG15: ubiquitin-like protein; CCL2: C-C motif chemokine 2; IFI6: IFN-α-inducible protein 6; PMAIP1: phorbol-12-myristate-13-acetate-induced protein 1; IFITM: IFN-induced transmembrane protein; CYP1B1: cytochrome p450 1b1; NPAS2: neuronal PAS domain-containing protein 2; TIMP-1: metalloproteinase inhibitor 1; MT1G/MT1X: metallothionein 1G/X; SERPING1: serpin family G member 1 (plasma protease C1 inhibitor); SAT1: sulfate anion transporter 1; GCA: grancalcin; IFNAR2: IFN-α/β receptor 2; SLC16A1: monocarboxylate transporter 1; ODC1: ornithine decarboxylase 1; FZD-5:

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
397 683-712 Gene denotes metalloproteinase inhibitor 1 Gene:7076
404 820-847 Gene denotes sulfate anion transporter 1 Gene:10861
416 940-965 Gene denotes ornithine decarboxylase 1 Gene:4953
426 110-115 Species denotes human Tax:9606
428 72-82 Gene denotes interferon Gene:3439