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PMC:7116472 / 42324-45569 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
746 91-99 Species denotes patients Tax:9606
747 126-134 Disease denotes covid-19 MESH:C000657245
762 2989-3007 Gene denotes C reactive protein Gene:1401
763 195-203 Species denotes patients Tax:9606
764 245-253 Species denotes patients Tax:9606
765 2847-2851 Chemical denotes Urea MESH:D014508
766 2913-2923 Chemical denotes Creatinine MESH:D003404
767 288-297 Disease denotes Mortality MESH:D003643
768 930-945 Disease denotes cardiac disease MESH:D006331
769 1004-1026 Disease denotes Chronic kidney disease MESH:D051436
770 1083-1101 Disease denotes Malignant neoplasm MESH:D009369
771 1177-1190 Disease denotes liver disease MESH:D008107
772 1327-1352 Disease denotes Chronic pulmonary disease MESH:D008171
773 1358-1364 Disease denotes asthma MESH:D001249
774 1422-1430 Disease denotes Diabetes MESH:D003920
775 2159-2163 Disease denotes coma MESH:D003128
777 3082-3106 Disease denotes coronavirus disease 2019 MESH:C000657245
779 3237-3244 Disease denotes obesity MESH:D009765

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T247 0-134 Sentence denotes Table 1 Demographic and clinical characteristics for derivation and validation cohorts of patients admitted to hospital with covid-19
T248 135-188 Sentence denotes characteristics Derivation cohort validation cohort
T249 189-287 Sentence denotes No of patients (%) or median (iQR) Total No (%) No of patients (%) or median (iQR) total No (%)
T250 288-369 Sentence denotes Mortality in hospital 11 426 (32.2) 35 463 (100.0) 6729 (30.1) 22 361 (100.0)
T251 370-381 Sentence denotes Age (years)
T252 382-446 Sentence denotes     <50 4876 (13.8) 35 277 (99.5) 2808 (12.6) 22 361 (100.0)
T253 447-490 Sentence denotes     50-69 10 183 (28.9) — 5762 (25.8) —
T254 491-532 Sentence denotes     70-79 8017 (22.7) — 4951 (22.1) —
T255 533-574 Sentence denotes     ≥80 12 201 (34.6) — 8840 (39.5) —
T256 575-587 Sentence denotes Sex at birth
T257 588-658 Sentence denotes     Female 14 741 (41.7) 35 356 (99.7) 10 178 (45.6) 22 319 (99.8)
T258 659-668 Sentence denotes Ethnicity
T259 669-738 Sentence denotes     White 26 300 (82.2) 31 987 (90.2) 16 831 (84.9) 19 818 (88.6)
T260 739-783 Sentence denotes     South Asian 1647 (5.1) — 811 (4.1) —
T261 784-826 Sentence denotes     East Asian 271 (0.8) — 140 (0.7) —
T262 827-865 Sentence denotes     Black 1256 (3.9) — 769 (3.9) —
T263 866-921 Sentence denotes     Other ethnic minority 2513 (7.9) — 1267 (6.4) —
T264 922-1003 Sentence denotes Chronic cardiac disease 10 513 (31.8) 33 090 (93.3) 7019 (34.0) 20 616 (92.2)
T265 1004-1082 Sentence denotes Chronic kidney disease 5653 (17.2) 32 834 (92.6) 3769 (18.4) 20 444 (91.4)
T266 1083-1157 Sentence denotes Malignant neoplasm 3312 (10.2) 32 556 (91.8) 2187 (10.8) 20 297 (90.8)
T267 1158-1242 Sentence denotes Moderate or severe liver disease 604 (1.9) 32 538 (91.8) 434 (2.1) 20 218 (90.4)
T268 1243-1326 Sentence denotes Obesity (clinician defined) 3414 (11.4) 29 829 (84.1) 2234 (12.2) 18 304 (81.9)
T269 1327-1421 Sentence denotes Chronic pulmonary disease (not asthma) 5830 (17.7) 32 990 (93.0) 3737 (18.2) 20 502 (91.7)
T270 1422-1501 Sentence denotes Diabetes (type 1 and 2) 8487 (26.0) 32 622 (92.0) 4275 (21.9) 19 511 (87.3)
T271 1502-1521 Sentence denotes No of comorbidities
T272 1522-1585 Sentence denotes     0 8497 (24.0) 35 463 (100.0) 5098 (22.8) 22 361 (100.0)
T273 1586-1623 Sentence denotes     1 9941 (28.0) — 6114 (27.3) —
T274 1624-1666 Sentence denotes     ≥2 17 025 (48.0) — 11 149 (49.9) —
T275 1667-1751 Sentence denotes Respiratory rate (breaths/min) 22.0 (9.0) 33 330 (94.0) 20.0 (8.0) 20 970 (93.8)
T276 1752-1827 Sentence denotes Oxygen saturation (%) 94.0 (6.0) 33 696 (95.0) 94.0 (5.0) 21 197 (94.8)
T277 1828-1917 Sentence denotes Systolic blood pressure (mm Hg) 124.0 (33.0) 33 637 (94.9) 129.0 (33.0) 21 073 (94.2)
T278 1918-2006 Sentence denotes Diastolic blood pressure (mm Hg) 70.0 (19.0) 33 568 (94.7) 73.0 (20.0) 21 026 (94.0)
T279 2007-2077 Sentence denotes Temperature (°C) 37.3 (1.5) 33 467 (94.4) 37.1 (1.5) 21 139 (94.5)
T280 2078-2150 Sentence denotes Heart rate (bpm) 90.0 (27.0) 33 405 (94.2) 90.0 (28.0) 20 991 (93.9)
T281 2151-2229 Sentence denotes Glasgow coma scale score 15.0 (0.0) 30 819 (86.9) 15.0 (0.0) 20 015 (89.5)
T282 2230-2305 Sentence denotes Haemoglobin (g/L) 129.0 (30.0) 29 924 (84.4) 127.0 (31.0) 18 480 (82.6)
T283 2306-2388 Sentence denotes White blood cell count (109/L) 7.4 (5.1) 29 740 (83.9) 7.6 (5.3) 18 362 (82.1)
T284 2389-2465 Sentence denotes Neutrophil count (109/L) 5.6 (4.6) 29 594 (83.5) 5.8 (4.9) 18 354 (82.1)
T285 2466-2542 Sentence denotes Lymphocyte count (109/L) 0.9 (0.7) 29 553 (83.3) 0.9 (0.7) 18 348 (82.1)
T286 2543-2625 Sentence denotes Platelet count (109/L) 216.0 (120.0) 29 582 (83.4) 223.0 (126.0) 18 281 (81.8)
T287 2626-2697 Sentence denotes Sodium (mmol/L) 137.0 (6.0) 29 522 (83.2) 137.0 (6.0) 18 409 (82.3)
T288 2698-2768 Sentence denotes Potassium (mmol/L) 4.1 (0.8) 27 224 (76.8) 4.1 (0.8) 16 926 (75.7)
T289 2769-2846 Sentence denotes Total bilirubin (mg/dL) 10.0 (7.0) 24 446 (68.9) 10.0 (7.0) 15 404 (68.9)
T290 2847-2912 Sentence denotes Urea (mmol/L) 7.0 (6.3) 26 122 (73.7) 7.3 (6.8) 16 863 (75.4)
T291 2913-2988 Sentence denotes Creatinine (pmol/L) 86.0 (53.0) 29 439 (83.0) 86.0 (56.0) 18 225 (81.5)
T292 2989-3072 Sentence denotes C reactive protein (mg/L) 84.9 (122.0) 27 856 (78.5) 78.0 (120.0) 17 119 (76.6)
T293 3073-3132 Sentence denotes Covid-19=coronavirus disease 2019; IQR=interquartile range.
T294 3133-3245 Sentence denotes Comorbidities were defined using the Charlson comorbidity index, with the addition of clinician defined obesity.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T32 1004-1026 Phenotype denotes Chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T33 1093-1101 Phenotype denotes neoplasm http://purl.obolibrary.org/obo/HP_0002664
T34 1177-1190 Phenotype denotes liver disease http://purl.obolibrary.org/obo/HP_0001392
T35 1243-1250 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T36 1358-1364 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T37 2159-2163 Phenotype denotes coma http://purl.obolibrary.org/obo/HP_0001259
T38 3237-3244 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513