PMC:7115396 / 27734-29292
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T149 | 694-700 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T150 | 775-782 | Body_part | denotes | ureters | http://purl.org/sig/ont/fma/fma9704 |
| T151 | 1348-1355 | Body_part | denotes | kidneys | http://purl.org/sig/ont/fma/fma7203 |
| T152 | 1444-1452 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T56 | 694-700 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T35 | 1453-1455 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T410 | 79-87 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T411 | 98-100 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T412 | 222-224 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T413 | 331-332 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T414 | 348-356 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T415 | 500-508 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T416 | 668-675 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
| T417 | 694-700 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T418 | 694-700 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T419 | 694-700 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T420 | 775-782 | http://purl.obolibrary.org/obo/UBERON_0000056 | denotes | ureters |
| T421 | 799-807 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T422 | 830-832 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T423 | 841-852 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens in |
| T424 | 923-924 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T425 | 1085-1087 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T426 | 1102-1103 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T427 | 1140-1148 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T428 | 1265-1273 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T429 | 1300-1302 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T430 | 1315-1316 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T431 | 1348-1355 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidneys |
| T432 | 1348-1355 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidneys |
| T433 | 1348-1355 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidneys |
| T434 | 1374-1382 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T87 | 75-78 | Chemical | denotes | SPF | http://purl.obolibrary.org/obo/CHEBI_88542 |
| T88 | 104-109 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T89 | 228-233 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T90 | 739-744 | Chemical | denotes | urate | http://purl.obolibrary.org/obo/CHEBI_17775 |
| T91 | 878-883 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T92 | 989-994 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T93 | 1029-1034 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T194 | 0-87 | Sentence | denotes | 3.3.1 Efficacy of the different vaccines against QX-like IBV challenge in SPF chickens |
| T195 | 88-189 | Sentence | denotes | The rH120-S1/YZ group exhibited effective protection against challenge with the QX-like strain rIBYZ. |
| T196 | 190-334 | Sentence | denotes | The mortality rate in the rH120-S1/YZ group was 0%, and no clinical signs or lesions were observed during the rIBYZ challenge period (Fig. 7 A). |
| T197 | 335-645 | Sentence | denotes | In contrast, chickens vaccinated with the rH120 strain began to exhibit clinical signs (e.g., coughing and nasal discharge) at 3 days post-challenge (dpc), and some chickens showed severe signs of listlessness, huddling, and ruffled feathers, with the mortality rate reaching 50% during the observation period. |
| T198 | 646-783 | Sentence | denotes | At necropsy, the dead animals displayed typical kidney lesions characterized by swelling and urate deposition in the tubules and ureters. |
| T199 | 784-1045 | Sentence | denotes | In contrast to chickens vaccinated with rH120-S1/YZ, the chickens in the unvaccinated control group exhibited clinical signs at 3 dpc, and a 60% mortality rate; the gross lesions of the dead birds in this group were similar to that of the rH120 group (Fig. 7B). |
| T200 | 1046-1231 | Sentence | denotes | Fig. 7 Efficacy of the rH120 and rH120-S1/YZ vaccines. (A) Percent survival of the vaccinated chickens challenged with the QX-like IBV rIBYZ strain during the 14-day observation period. |
| T201 | 1232-1487 | Sentence | denotes | No mortality was observed in the chickens vaccinated with the rH120-S1/YZ strain. (B) Gross lesions observed on the kidneys of the vaccinated chickens challenged with the rIBYZ strain at 5 or 7 dpc. (C) The mean antibody OD value at 7, 14, 21, and 28 dpv. |
| T202 | 1488-1558 | Sentence | denotes | All data are presented as the mean ± standard error of the mean (SEM). |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T18 | 429-437 | Phenotype | denotes | coughing | http://purl.obolibrary.org/obo/HP_0012735 |
| T19 | 442-457 | Phenotype | denotes | nasal discharge | http://purl.obolibrary.org/obo/HP_0031417 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 411 | 58-61 | Species | denotes | IBV | Tax:11120 |
| 419 | 1140-1148 | Species | denotes | chickens | Tax:9031 |
| 420 | 1265-1273 | Species | denotes | chickens | Tax:9031 |
| 421 | 1306-1317 | Species | denotes | strain. (B) | Tax:35794 |
| 422 | 1374-1382 | Species | denotes | chickens | Tax:9031 |
| 423 | 1177-1180 | Species | denotes | IBV | Tax:11120 |
| 424 | 1403-1408 | Chemical | denotes | rIBYZ | |
| 425 | 1235-1244 | Disease | denotes | mortality | MESH:D003643 |
| 438 | 348-356 | Species | denotes | chickens | Tax:9031 |
| 439 | 500-508 | Species | denotes | chickens | Tax:9031 |
| 440 | 799-807 | Species | denotes | chickens | Tax:9031 |
| 441 | 841-849 | Species | denotes | chickens | Tax:9031 |
| 442 | 300-305 | Chemical | denotes | rIBYZ | |
| 443 | 739-744 | Chemical | denotes | urate | MESH:D014527 |
| 444 | 194-203 | Disease | denotes | mortality | MESH:D003643 |
| 445 | 429-437 | Disease | denotes | coughing | MESH:D003371 |
| 446 | 587-596 | Disease | denotes | mortality | MESH:D003643 |
| 447 | 694-708 | Disease | denotes | kidney lesions | MESH:D007674 |
| 448 | 726-734 | Disease | denotes | swelling | MESH:D004487 |
| 449 | 929-938 | Disease | denotes | mortality | MESH:D003643 |