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PMC:7105881 / 60072-61563 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1767 115-123 Species denotes mers-cov Tax:1335626
1769 221-229 Disease denotes covid-19 MESH:C000657245
1771 344-348 Species denotes ncov Tax:2697049
1773 401-404 Gene denotes ct2 Gene:922
1775 452-455 Gene denotes ct2 Gene:922

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T334 704-712 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T335 777-785 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T336 933-940 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T337 1002-1009 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T338 1121-1129 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T285 680-688 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T286 789-797 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T287 799-805 Disease denotes PDB: 5 http://purl.obolibrary.org/obo/MONDO_0009394
T288 828-834 Disease denotes PDB: 5 http://purl.obolibrary.org/obo/MONDO_0009394
T289 1152-1160 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T290 1193-1201 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T679 124-126 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T680 662-664 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T681 811-812 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T682 945-952 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T683 1212-1213 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T684 1298-1316 http://purl.obolibrary.org/obo/GO_0043235 denotes receptor complexes

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T79366 124-126 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T88377 704-712 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T67552 777-785 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T11071 933-940 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T81908 1002-1009 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T18364 1121-1129 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T2754 1352-1363 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T325 0-8 Sentence denotes Funding.
T326 9-79 Sentence denotes This work was supported by the NIH grants R01AI137472 and R01AI139092.
T327 80-127 Sentence denotes 1 https://www.who.int/emergencies/mers-cov/en/
T328 128-250 Sentence denotes 2 https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200219-sitrep-30-covid-19.pdf?sfvrsn=6e50645_2
T329 251-370 Sentence denotes 3 https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200204-sitrep-15-ncov.pdf?sfvrsn=88fe8ad6_2
T330 371-421 Sentence denotes 4 https://clinicaltrials.gov/ct2/show/NCT03615911
T331 422-472 Sentence denotes 5 https://clinicaltrials.gov/ct2/show/NCT03399578
T332 474-496 Sentence denotes Supplementary Material
T333 497-654 Sentence denotes The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2020.00298/full#supplementary-material
T334 655-765 Sentence denotes FIGURE S1 Structures of SARS-CoV and MERS-CoV S proteins, RBDs, and their complexes with respective receptor.
T335 766-803 Sentence denotes Trimeric S proteins of SARS-CoV (PDB:
T336 804-832 Sentence denotes 5×5b) (A) and MERS-CoV (PDB:
T337 833-884 Sentence denotes 5×5f) (C) are colored differently for each monomer.
T338 885-982 Sentence denotes Two conformations of the RBD in each trimeric S protein are labeled as standing and lying states.
T339 983-1053 Sentence denotes The RBDs of each S protein are shown as light blue on the right panel.
T340 1054-1183 Sentence denotes ACE2 and DPP4 receptors are respectively modeled to the trimeric S proteins by match-alignment of SARS-CoV RBD-ACE2 complex (PDB:
T341 1184-1249 Sentence denotes 2AJF) to SARS-CoV S trimer (B) or MERS-CoV RBD-DPP4 complex (PDB:
T342 1250-1281 Sentence denotes 4kr0) to MERS-CoV S trimer (D).
T343 1282-1345 Sentence denotes Each of the RBD-receptor complexes is shown on the right panel.
T344 1346-1454 Sentence denotes ACE2, angiotensin-converting enzyme 2; DPP4, dipeptidyl peptidase 4; RBD, receptor-binding domain; S, spike.
T345 1455-1491 Sentence denotes Click here for additional data file.