PMC:7105881 / 33193-35293
Annnotations
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"1083","span":{"begin":432,"end":436},"obj":"Gene"},{"id":"1084","span":{"begin":621,"end":625},"obj":"Gene"},{"id":"1085","span":{"begin":0,"end":8},"obj":"Species"},{"id":"1086","span":{"begin":278,"end":286},"obj":"Species"},{"id":"1087","span":{"begin":501,"end":509},"obj":"Species"},{"id":"1088","span":{"begin":527,"end":534},"obj":"Species"},{"id":"1089","span":{"begin":539,"end":543},"obj":"Species"},{"id":"1090","span":{"begin":603,"end":611},"obj":"Species"},{"id":"1091","span":{"begin":692,"end":700},"obj":"Species"},{"id":"1092","span":{"begin":844,"end":848},"obj":"Species"},{"id":"1093","span":{"begin":990,"end":1005},"obj":"Species"},{"id":"1094","span":{"begin":1179,"end":1187},"obj":"Species"},{"id":"1095","span":{"begin":1199,"end":1203},"obj":"Species"},{"id":"1096","span":{"begin":1424,"end":1432},"obj":"Species"},{"id":"1097","span":{"begin":1551,"end":1555},"obj":"Species"},{"id":"1098","span":{"begin":1564,"end":1572},"obj":"Species"},{"id":"1099","span":{"begin":1692,"end":1700},"obj":"Species"},{"id":"1100","span":{"begin":1715,"end":1720},"obj":"Species"},{"id":"1101","span":{"begin":1839,"end":1847},"obj":"Species"},{"id":"1102","span":{"begin":908,"end":919},"obj":"Species"},{"id":"1103","span":{"begin":426,"end":431},"obj":"Species"},{"id":"1104","span":{"begin":1110,"end":1118},"obj":"Species"},{"id":"1105","span":{"begin":857,"end":875},"obj":"Disease"},{"id":"1106","span":{"begin":1013,"end":1016},"obj":"CellLine"},{"id":"1107","span":{"begin":1329,"end":1333},"obj":"CellLine"}],"attributes":[{"id":"A1083","pred":"tao:has_database_id","subj":"1083","obj":"Gene:16017"},{"id":"A1084","pred":"tao:has_database_id","subj":"1084","obj":"Gene:59272"},{"id":"A1085","pred":"tao:has_database_id","subj":"1085","obj":"Tax:694009"},{"id":"A1086","pred":"tao:has_database_id","subj":"1086","obj":"Tax:694009"},{"id":"A1087","pred":"tao:has_database_id","subj":"1087","obj":"Tax:694009"},{"id":"A1088","pred":"tao:has_database_id","subj":"1088","obj":"Tax:9986"},{"id":"A1089","pred":"tao:has_database_id","subj":"1089","obj":"Tax:10090"},{"id":"A1090","pred":"tao:has_database_id","subj":"1090","obj":"Tax:694009"},{"id":"A1091","pred":"tao:has_database_id","subj":"1091","obj":"Tax:694009"},{"id":"A1092","pred":"tao:has_database_id","subj":"1092","obj":"Tax:10090"},{"id":"A1093","pred":"tao:has_database_id","subj":"1093","obj":"Tax:10029"},{"id":"A1094","pred":"tao:has_database_id","subj":"1094","obj":"Tax:694009"},{"id":"A1095","pred":"tao:has_database_id","subj":"1095","obj":"Tax:10090"},{"id":"A1096","pred":"tao:has_database_id","subj":"1096","obj":"Tax:694009"},{"id":"A1097","pred":"tao:has_database_id","subj":"1097","obj":"Tax:10090"},{"id":"A1098","pred":"tao:has_database_id","subj":"1098","obj":"Tax:694009"},{"id":"A1099","pred":"tao:has_database_id","subj":"1099","obj":"Tax:694009"},{"id":"A1100","pred":"tao:has_database_id","subj":"1100","obj":"Tax:9606"},{"id":"A1101","pred":"tao:has_database_id","subj":"1101","obj":"Tax:694009"},{"id":"A1102","pred":"tao:has_database_id","subj":"1102","obj":"Tax:575864"},{"id":"A1103","pred":"tao:has_database_id","subj":"1103","obj":"Tax:9606"},{"id":"A1104","pred":"tao:has_database_id","subj":"1104","obj":"Tax:694009"},{"id":"A1105","pred":"tao:has_database_id","subj":"1105","obj":"MESH:C000657245"},{"id":"A1106","pred":"tao:has_database_id","subj":"1106","obj":"CVCL:0213"},{"id":"A1107","pred":"tao:has_database_id","subj":"1107","obj":"CVCL:0063"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T188","span":{"begin":356,"end":363},"obj":"Body_part"},{"id":"T189","span":{"begin":591,"end":598},"obj":"Body_part"},{"id":"T190","span":{"begin":654,"end":661},"obj":"Body_part"},{"id":"T191","span":{"begin":1006,"end":1011},"obj":"Body_part"},{"id":"T192","span":{"begin":1018,"end":1023},"obj":"Body_part"},{"id":"T193","span":{"begin":1229,"end":1232},"obj":"Body_part"},{"id":"T194","span":{"begin":1334,"end":1338},"obj":"Body_part"},{"id":"T195","span":{"begin":1353,"end":1360},"obj":"Body_part"},{"id":"T196","span":{"begin":1633,"end":1641},"obj":"Body_part"},{"id":"T197","span":{"begin":1747,"end":1751},"obj":"Body_part"},{"id":"T198","span":{"begin":1872,"end":1880},"obj":"Body_part"},{"id":"T199","span":{"begin":1934,"end":1941},"obj":"Body_part"}],"attributes":[{"id":"A188","pred":"fma_id","subj":"T188","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A189","pred":"fma_id","subj":"T189","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A190","pred":"fma_id","subj":"T190","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A191","pred":"fma_id","subj":"T191","obj":"http://purl.org/sig/ont/fma/fma7209"},{"id":"A192","pred":"fma_id","subj":"T192","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A193","pred":"fma_id","subj":"T193","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A194","pred":"fma_id","subj":"T194","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A195","pred":"fma_id","subj":"T195","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A196","pred":"fma_id","subj":"T196","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A197","pred":"fma_id","subj":"T197","obj":"http://purl.org/sig/ont/fma/fma24920"},{"id":"A198","pred":"fma_id","subj":"T198","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A199","pred":"fma_id","subj":"T199","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
LitCovid_AGAC
{"project":"LitCovid_AGAC","denotations":[{"id":"p63076s43","span":{"begin":560,"end":567},"obj":"NegReg"},{"id":"p63076s45","span":{"begin":572,"end":579},"obj":"Interaction"},{"id":"p63076s50","span":{"begin":603,"end":625},"obj":"MPA"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T177","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"T178","span":{"begin":170,"end":174},"obj":"Disease"},{"id":"T179","span":{"begin":278,"end":286},"obj":"Disease"},{"id":"T180","span":{"begin":501,"end":509},"obj":"Disease"},{"id":"T181","span":{"begin":603,"end":611},"obj":"Disease"},{"id":"T182","span":{"begin":692,"end":700},"obj":"Disease"},{"id":"T183","span":{"begin":857,"end":875},"obj":"Disease"},{"id":"T184","span":{"begin":866,"end":875},"obj":"Disease"},{"id":"T185","span":{"begin":1110,"end":1118},"obj":"Disease"},{"id":"T186","span":{"begin":1179,"end":1187},"obj":"Disease"},{"id":"T187","span":{"begin":1424,"end":1432},"obj":"Disease"},{"id":"T188","span":{"begin":1564,"end":1572},"obj":"Disease"},{"id":"T189","span":{"begin":1692,"end":1700},"obj":"Disease"},{"id":"T190","span":{"begin":1839,"end":1847},"obj":"Disease"},{"id":"T191","span":{"begin":1948,"end":1952},"obj":"Disease"},{"id":"T192","span":{"begin":2039,"end":2043},"obj":"Disease"}],"attributes":[{"id":"A177","pred":"mondo_id","subj":"T177","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A178","pred":"mondo_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A179","pred":"mondo_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A180","pred":"mondo_id","subj":"T180","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A181","pred":"mondo_id","subj":"T181","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A182","pred":"mondo_id","subj":"T182","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A183","pred":"mondo_id","subj":"T183","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A184","pred":"mondo_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A185","pred":"mondo_id","subj":"T185","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A186","pred":"mondo_id","subj":"T186","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A187","pred":"mondo_id","subj":"T187","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A188","pred":"mondo_id","subj":"T188","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A189","pred":"mondo_id","subj":"T189","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A190","pred":"mondo_id","subj":"T190","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A191","pred":"mondo_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A192","pred":"mondo_id","subj":"T192","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T440","span":{"begin":132,"end":133},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T441","span":{"begin":347,"end":348},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T442","span":{"begin":412,"end":414},"obj":"http://purl.obolibrary.org/obo/CLO_0052676"},{"id":"T443","span":{"begin":426,"end":431},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T444","span":{"begin":442,"end":444},"obj":"http://purl.obolibrary.org/obo/CLO_0052676"},{"id":"T445","span":{"begin":588,"end":590},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T446","span":{"begin":998,"end":1005},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10026"},{"id":"T447","span":{"begin":1006,"end":1011},"obj":"http://www.ebi.ac.uk/efo/EFO_0000973"},{"id":"T448","span":{"begin":1013,"end":1016},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T449","span":{"begin":1013,"end":1016},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T450","span":{"begin":1013,"end":1016},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T451","span":{"begin":1013,"end":1016},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T452","span":{"begin":1013,"end":1016},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T453","span":{"begin":1013,"end":1016},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T454","span":{"begin":1018,"end":1023},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T455","span":{"begin":1327,"end":1328},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T456","span":{"begin":1329,"end":1333},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T457","span":{"begin":1329,"end":1333},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T458","span":{"begin":1329,"end":1333},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T459","span":{"begin":1334,"end":1338},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T460","span":{"begin":1715,"end":1720},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T196","span":{"begin":356,"end":363},"obj":"Chemical"},{"id":"T197","span":{"begin":591,"end":598},"obj":"Chemical"},{"id":"T198","span":{"begin":654,"end":661},"obj":"Chemical"},{"id":"T199","span":{"begin":1353,"end":1360},"obj":"Chemical"},{"id":"T200","span":{"begin":1633,"end":1641},"obj":"Chemical"},{"id":"T201","span":{"begin":1872,"end":1880},"obj":"Chemical"},{"id":"T202","span":{"begin":1934,"end":1941},"obj":"Chemical"}],"attributes":[{"id":"A196","pred":"chebi_id","subj":"T196","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A197","pred":"chebi_id","subj":"T197","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A198","pred":"chebi_id","subj":"T198","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A199","pred":"chebi_id","subj":"T199","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A200","pred":"chebi_id","subj":"T200","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A201","pred":"chebi_id","subj":"T201","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A202","pred":"chebi_id","subj":"T202","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
2_test
{"project":"2_test","denotations":[{"id":"32265848-15474494-36511136","span":{"begin":196,"end":200},"obj":"15474494"},{"id":"32265848-23252385-36511138","span":{"begin":223,"end":227},"obj":"23252385"},{"id":"32265848-23977435-36511139","span":{"begin":241,"end":245},"obj":"23977435"},{"id":"32265848-15474494-36511140","span":{"begin":638,"end":642},"obj":"15474494"},{"id":"32265848-17092615-36511141","span":{"begin":888,"end":892},"obj":"17092615"},{"id":"32265848-20374001-36511143","span":{"begin":1305,"end":1309},"obj":"20374001"},{"id":"32265848-17049691-36511146","span":{"begin":2074,"end":2078},"obj":"17049691"},{"id":"32265848-22311359-36511147","span":{"begin":2094,"end":2098},"obj":"22311359"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T198","span":{"begin":0,"end":247},"obj":"Sentence"},{"id":"T199","span":{"begin":248,"end":322},"obj":"Sentence"},{"id":"T200","span":{"begin":323,"end":644},"obj":"Sentence"},{"id":"T201","span":{"begin":645,"end":894},"obj":"Sentence"},{"id":"T202","span":{"begin":895,"end":1311},"obj":"Sentence"},{"id":"T203","span":{"begin":1312,"end":1464},"obj":"Sentence"},{"id":"T204","span":{"begin":1465,"end":1602},"obj":"Sentence"},{"id":"T205","span":{"begin":1603,"end":1900},"obj":"Sentence"},{"id":"T206","span":{"begin":1901,"end":2100},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"SARS-CoV RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}
LitCovid-PMC-OGER-BB
{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T556","span":{"begin":0,"end":8},"obj":"SP_10"},{"id":"T557","span":{"begin":54,"end":62},"obj":"BV_9"},{"id":"T558","span":{"begin":108,"end":118},"obj":"GO:0042571"},{"id":"T559","span":{"begin":170,"end":174},"obj":"SP_10"},{"id":"T560","span":{"begin":278,"end":286},"obj":"SP_10"},{"id":"T561","span":{"begin":426,"end":431},"obj":"SP_6;NCBITaxon:9606"},{"id":"T562","span":{"begin":432,"end":436},"obj":"GO:0071735"},{"id":"T563","span":{"begin":482,"end":492},"obj":"GO:0042571"},{"id":"T564","span":{"begin":501,"end":509},"obj":"SP_10"},{"id":"T565","span":{"begin":527,"end":534},"obj":"NCBITaxon:9986"},{"id":"T566","span":{"begin":539,"end":543},"obj":"NCBITaxon:10088"},{"id":"T567","span":{"begin":603,"end":611},"obj":"SP_10"},{"id":"T568","span":{"begin":621,"end":625},"obj":"G_3;PG_10;PR:000003622"},{"id":"T569","span":{"begin":692,"end":700},"obj":"SP_10"},{"id":"T570","span":{"begin":712,"end":722},"obj":"GO:0042571"},{"id":"T571","span":{"begin":740,"end":750},"obj":"GO:0042571"},{"id":"T572","span":{"begin":844,"end":848},"obj":"NCBITaxon:10088"},{"id":"T573","span":{"begin":857,"end":865},"obj":"SP_10"},{"id":"T574","span":{"begin":977,"end":986},"obj":"GO:0010467"},{"id":"T575","span":{"begin":1006,"end":1011},"obj":"UBERON:0000992"},{"id":"T576","span":{"begin":1066,"end":1076},"obj":"GO:0042571"},{"id":"T577","span":{"begin":1110,"end":1118},"obj":"SP_10"},{"id":"T578","span":{"begin":1132,"end":1142},"obj":"GO:0042571"},{"id":"T579","span":{"begin":1179,"end":1187},"obj":"SP_10"},{"id":"T580","span":{"begin":1199,"end":1203},"obj":"NCBITaxon:10088"},{"id":"T581","span":{"begin":1223,"end":1228},"obj":"NCBITaxon:10239"},{"id":"T582","span":{"begin":1275,"end":1280},"obj":"NCBITaxon:10239"},{"id":"T583","span":{"begin":1329,"end":1333},"obj":"CL_4"},{"id":"T584","span":{"begin":1339,"end":1348},"obj":"GO:0010467"},{"id":"T585","span":{"begin":1424,"end":1432},"obj":"SP_10"},{"id":"T586","span":{"begin":1504,"end":1514},"obj":"GO:0042571"},{"id":"T587","span":{"begin":1551,"end":1555},"obj":"NCBITaxon:10088"},{"id":"T588","span":{"begin":1564,"end":1572},"obj":"SP_10"},{"id":"T589","span":{"begin":1645,"end":1649},"obj":"PR:000001902"},{"id":"T590","span":{"begin":1692,"end":1700},"obj":"SP_10"},{"id":"T591","span":{"begin":1715,"end":1720},"obj":"SP_6;NCBITaxon:9606"},{"id":"T592","span":{"begin":1747,"end":1757},"obj":"SP_5"},{"id":"T593","span":{"begin":1789,"end":1807},"obj":"BV_7"},{"id":"T594","span":{"begin":1808,"end":1818},"obj":"BV_7;GO:0042571"},{"id":"T595","span":{"begin":1839,"end":1847},"obj":"SP_10"},{"id":"T596","span":{"begin":1848,"end":1858},"obj":"GO:0010467"},{"id":"T597","span":{"begin":1932,"end":1941},"obj":"PG_1"},{"id":"T598","span":{"begin":1948,"end":1952},"obj":"SP_10"},{"id":"T599","span":{"begin":2039,"end":2043},"obj":"SP_10"},{"id":"T54867","span":{"begin":0,"end":8},"obj":"SP_10"},{"id":"T62823","span":{"begin":54,"end":62},"obj":"BV_9"},{"id":"T18461","span":{"begin":108,"end":118},"obj":"GO:0042571"},{"id":"T90326","span":{"begin":170,"end":174},"obj":"SP_10"},{"id":"T58860","span":{"begin":278,"end":286},"obj":"SP_10"},{"id":"T51408","span":{"begin":426,"end":431},"obj":"SP_6;NCBITaxon:9606"},{"id":"T32600","span":{"begin":432,"end":436},"obj":"GO:0071735"},{"id":"T99084","span":{"begin":482,"end":492},"obj":"GO:0042571"},{"id":"T60337","span":{"begin":501,"end":509},"obj":"SP_10"},{"id":"T29995","span":{"begin":527,"end":534},"obj":"NCBITaxon:9986"},{"id":"T6206","span":{"begin":539,"end":543},"obj":"NCBITaxon:10088"},{"id":"T53931","span":{"begin":603,"end":611},"obj":"SP_10"},{"id":"T59081","span":{"begin":621,"end":625},"obj":"G_3;PG_10;PR:000003622"},{"id":"T14290","span":{"begin":692,"end":700},"obj":"SP_10"},{"id":"T82096","span":{"begin":712,"end":722},"obj":"GO:0042571"},{"id":"T18916","span":{"begin":740,"end":750},"obj":"GO:0042571"},{"id":"T40398","span":{"begin":844,"end":848},"obj":"NCBITaxon:10088"},{"id":"T74279","span":{"begin":857,"end":865},"obj":"SP_10"},{"id":"T76668","span":{"begin":977,"end":986},"obj":"GO:0010467"},{"id":"T74849","span":{"begin":1006,"end":1011},"obj":"UBERON:0000992"},{"id":"T10182","span":{"begin":1066,"end":1076},"obj":"GO:0042571"},{"id":"T59383","span":{"begin":1110,"end":1118},"obj":"SP_10"},{"id":"T51937","span":{"begin":1132,"end":1142},"obj":"GO:0042571"},{"id":"T92066","span":{"begin":1179,"end":1187},"obj":"SP_10"},{"id":"T63789","span":{"begin":1199,"end":1203},"obj":"NCBITaxon:10088"},{"id":"T5217","span":{"begin":1223,"end":1228},"obj":"NCBITaxon:10239"},{"id":"T50236","span":{"begin":1275,"end":1280},"obj":"NCBITaxon:10239"},{"id":"T41331","span":{"begin":1329,"end":1333},"obj":"CL_4"},{"id":"T5770","span":{"begin":1339,"end":1348},"obj":"GO:0010467"},{"id":"T32780","span":{"begin":1424,"end":1432},"obj":"SP_10"},{"id":"T5100","span":{"begin":1504,"end":1514},"obj":"GO:0042571"},{"id":"T62133","span":{"begin":1551,"end":1555},"obj":"NCBITaxon:1008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RBD contains multiple conformation-dependent epitopes capable of eliciting high-titer neutralizing antibodies; thus, it is a major target for the development of SARS vaccines (He et al., 2004, 2005a; Jiang et al., 2012; Zhu et al., 2013). Subunit vaccines based on the SARS-CoV RBD have been extensively explored. Studies have found that a fusion protein containing RBD and the fragment crystallizable (Fc) region of human IgG1 (RBD-Fc) elicited highly potent neutralizing antibodies against SARS-CoV in the immunized rabbits and mice, which strongly blocked the binding between S1 protein and SARS-CoV receptor ACE2 (He et al., 2004). This RBD protein induced long-term, high-level SARS-CoV S-specific antibodies and neutralizing antibodies that could be maintained for 12 months after immunization, protecting most of the vaccinated mice against SARS-CoV infection (Du et al., 2007). In addition, recombinant RBDs (residues 318–510 or 318–536) stably or transiently expressed in Chinese hamster ovary (CHO) cells bound strongly to RBD-specific monoclonal antibodies (mAbs), elicited high-titer anti-SARS-CoV neutralizing antibodies, and protected most, or all, of the SARS-CoV-challenged mice, with undetectable viral RNA and undetectable or significantly reduced viral load (Du et al., 2009c, 2010). Significantly, a 293T cell-expressed RBD protein maintains excellent conformation and good antigenicity to bind SARS-CoV RBD-specific neutralizing mAbs. It elicited highly potent neutralizing antibodies that completely protected immunized mice against SARS-CoV challenge (Du et al., 2009b). Particularly, RBDs from the S proteins of Tor2, GD03, and SZ3, representative strains of SARS-CoV isolated from human 2002–2003, 2003–2004, and palm civet strains, can induce high-titer cross-neutralizing antibodies against pseudotyped SARS-CoV expressing respective S proteins (He et al., 2006c). Different from the full-length S protein-based SARS subunit vaccines, no obvious pathogenic effects have been identified in the RBD-based SARS subunit vaccines (Kam et al., 2007; Jaume et al., 2012)."}