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PMC:7033698 / 5269-6004 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T46 95-99 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T47 230-233 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T48 373-376 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T49 672-675 Body_part denotes Gag http://purl.org/sig/ont/fma/fma63011

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T46 95-99 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T47 210-215 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 (2)
T48 224-229 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 (2)
T49 256-258 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T50 260-262 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T51 284-294 http://purl.obolibrary.org/obo/NCBITaxon_2759 denotes Eukaryotic
T52 295-297 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T53 299-301 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T54 357-362 http://purl.obolibrary.org/obo/CLO_0001000 denotes (3) 5
T55 379-381 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T56 382-388 http://purl.obolibrary.org/obo/CLO_0054057 denotes (18) 1
T57 383-385 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T58 414-424 http://purl.obolibrary.org/obo/NCBITaxon_2759 denotes Eukaryotic
T59 425-432 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T60 473-480 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T61 492-498 http://purl.obolibrary.org/obo/CLO_0001053 denotes (1) 21
T62 523-528 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T63 529-534 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 (1)

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 677-680 Chemical denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T39 0-8 Sentence denotes Table 1.
T40 9-85 Sentence denotes Blast search results of four insertion sequences against sequence databases.
T41 86-190 Sentence denotes Database Gene source Insertion 1 TNGTKR Insertion 2 HKNNKS Insertion 3 RSYLTPGDSSSG Insertion 4 QTNSPRRA
T42 191-229 Sentence denotes Whole database CoV 2 (2) 0 3 (3) 2 (2)
T43 230-243 Sentence denotes HIV-1 0 0 0 0
T44 244-283 Sentence denotes Prokaryotic 27 (27) 3 (3) 74 (0) 66 (1)
T45 284-324 Sentence denotes Eukaryotic 71 (71) 97 (97) 23 (0) 32 (1)
T46 325-372 Sentence denotes Only viral database CoV 3 (3) 3 (3) 5 (3) 3 (2)
T47 373-407 Sentence denotes HIV-1 18 (18) 1 (1) 4 (0)* 6 (0)**
T48 408-460 Sentence denotes Other Eukaryotic viruses 49 (2) 66 (8) 69 (0) 62 (0)
T49 461-509 Sentence denotes Prokaryotic viruses 29 (13) 30 (1) 21 (0) 28 (0)
T50 510-548 Sentence denotes Unclassified virus 1 (1) 0 1 (0) 1 (0)
T51 549-735 Sentence denotes Top 100 hits are analyzed and the numbers of 100% matches are shown in parentheses. * Similarity at 67%; ** Random hits in Gag, Pro and Env sequences with similarity between 42% and 88%.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
74 206-211 Species denotes CoV 2 Tax:2697049
75 230-235 Species denotes HIV-1 Tax:11676
76 107-116 Species denotes Insertion Tax:2673
77 126-135 Species denotes Insertion Tax:2673
78 145-154 Species denotes Insertion Tax:2673
79 170-179 Species denotes Insertion Tax:2673
81 38-57 Species denotes insertion sequences Tax:2673
85 672-675 Gene denotes Gag Gene:155030
86 685-688 Gene denotes Env Gene:100616444
87 677-680 Chemical denotes Pro MESH:D011392